PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027420

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 439aa MW: 48352.6 Da PI: 5.9125

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027420	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.2	5.7e-36	119	177	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k l+cprC s++tkfCyynny++sqPr+fCk+C+ryWt+GG++r vPvG+grrk+k DCAR_027420 119 PDKLLPCPRCCSMDTKFCYYNNYNVSQPRHFCKKCQRYWTAGGTMRSVPVGSGRRKSKC 177 78999***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	116	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.5E-30	121	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.68	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MIKLFGMTIR SIPNEEDDIQ LSSSTTTATS VNTKDPAQVN NEESISVDEV VEQAKEEPTT 60 PNFDEEITIP EGDGTTRSSE RSEDPERSTV DKETSVLNTN EKEDPSDTSN SDEKSLGKPD 120 KLLPCPRCCS MDTKFCYYNN YNVSQPRHFC KKCQRYWTAG GTMRSVPVGS GRRKSKCSPA 180 SKYHQMIITE ALQAARVASA NGIYQPNGSL LAFGSDSAQC ENTSSAPIHK RKSENCVRNN 240 SFEETDDGNS SGSSSTVLNP NEKVLCVRPK LKNNQQSPSQ LSCFPVPPWA SPWNTAEWRS 300 ATQQPAFCPP GFPTSFYPTP SYWACTAPNP WNMPWLSPQC SSGELSNPEK LPLEDQDLRR 360 GVLTPKTLRI HDPIEAAQSS IWSTLGIKNE HTKQANDASL HEASAAKGVQ RYHMTKAAMV 420 LQANPAALHR SYNFLETA*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MIKLFGMTIR SIPNEEDDIQ LSSSTTTATS VNTKDPAQVN NEESISVDEV VEQAKEEPTT  60
PNFDEEITIP EGDGTTRSSE RSEDPERSTV DKETSVLNTN EKEDPSDTSN SDEKSLGKPD  120
KLLPCPRCCS MDTKFCYYNN YNVSQPRHFC KKCQRYWTAG GTMRSVPVGS GRRKSKCSPA  180
SKYHQMIITE ALQAARVASA NGIYQPNGSL LAFGSDSAQC ENTSSAPIHK RKSENCVRNN  240
SFEETDDGNS SGSSSTVLNP NEKVLCVRPK LKNNQQSPSQ LSCFPVPPWA SPWNTAEWRS  300
ATQQPAFCPP GFPTSFYPTP SYWACTAPNP WNMPWLSPQC SSGELSNPEK LPLEDQDLRR  360
GVLTPKTLRI HDPIEAAQSS IWSTLGIKNE HTKQANDASL HEASAAKGVQ RYHMTKAAMV  420
LQANPAALHR SYNFLETA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017221059.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A175YPW5	0.0	A0A175YPW5_DAUCS; Uncharacterized protein
STRING	XP_010108679.1	1e-121	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-71	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	DCAR_027420