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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 222aa MW: 25042 Da PI: 9.4114 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 6.9e-32 | 45 | 95 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + YkeClkNhA+s+Ggha+DGCgEfmps +++++lkCaACgCHRnFHRre + DCAR_027413 45 ISYKECLKNHAVSIGGHALDGCGEFMPS----THPNSLKCAACGCHRNFHRREAD 95 78*************************9....7899****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-19 | 45 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-27 | 45 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.153 | 47 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.2E-29 | 47 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 119 | 192 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.17E-19 | 122 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.6E-25 | 131 | 187 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
METNPKLTSQ TSDPRTTNIN NAHPIPRSLI SSSHLNKKHH QQHIISYKEC LKNHAVSIGG 60 HALDGCGEFM PSTHPNSLKC AACGCHRNFH RREADEPDSP TPHFLTFRLI STLAPDEHKH 120 RHHAAENASS RKRLRTRFSR EQKERMRVFA EKLGWRMHKS DEVSVEEFCK EIGVGKSVLK 180 VWMHNNKTTL GKRDDSSNNV AARDGNIGGG EENEISTQHH L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 132 | 187 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RKRLRTR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222358.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9LXG0 | 3e-48 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A175YNI1 | 1e-164 | A0A175YNI1_DAUCS; Uncharacterized protein | ||||
STRING | XP_010257380.1 | 4e-59 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-50 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027413 |
Publications ? help Back to Top | |||
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