PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027092
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 485aa    MW: 50905.9 Da    PI: 8.0593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027092genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-125681227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG+rC+F+H++
  DCAR_027092 56 DEADCIYYLRTGFCGYGSRCRFNHPR 81
                 6799********************96 PP
2zf-CCCH37.15.5e-12103127327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtG Ck+G++Ck++H++
  DCAR_027092 103 QPVCQYYMRTGMCKFGASCKYHHPR 127
                  689********************96 PP
3zf-CCCH33.29e-11148172226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C+++++tG+Ck+G +CkF+H+
  DCAR_027092 148 GEKXCSYYLKTGQCKFGVTCKFHHP 172
                  6789********************8 PP
4zf-CCCH382.8e-12312337126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+++++tG+Ck+G++Ck++H+
  DCAR_027092 312 PGQPECQHYMKTGECKFGSSCKYHHP 337
                  5789*********************8 PP
5zf-CCCH30.65.9e-10360384327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +lC+++a +G+Ck+G +CkF H++
  DCAR_027092 360 APLCSHYALNGICKFGHSCKFDHPM 384
                  68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2955482IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-55481IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-105681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-56081IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-7100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469100128IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5105128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314146174IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6148176IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4150172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901311339IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6311338IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10313337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5315338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4317337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295357385IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6357384IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7360384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6360387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4362383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MERLQPTEGS SPDPVAEWSS PGGETGLEEP MWQLGLGGGG GGGGGGGDDS YPERPDEADC  60
IYYLRTGFCG YGSRCRFNHP RDRNLVVGAM RASGGEYPER VGQPVCQYYM RTGMCKFGAS  120
CKYHHPRHGV GSASSVAISV SGYPLRPGEK XCSYYLKTGQ CKFGVTCKFH HPHPDGTHVP  180
ARALFPAAAT VPSAIYPAMQ SPGPSSQQYG VVAGNWPVAR PALLPGSYVQ GTYGPVILPP  240
GMVPMAGWNP YQAPLSPVAS PSAQSNAGAG PIYGMSQLSS TAPVFAGPYL SMTSPAVHSA  300
YNQKEHVFPE RPGQPECQHY MKTGECKFGS SCKYHHPAQW SSPKTNFVLS PMGLPLRPGA  360
PLCSHYALNG ICKFGHSCKF DHPMSTLSYS PSASSLTDMP VAPYPVGSSM ATLAPSSSSS  420
ELKPDKEASV TRMSTPLSTA AGSVGSIFSR NDTLPQSSIQ QPGQSSTTST GSSTPHISEA  480
STSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223316.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ84W911e-159C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A175YP530.0A0A175YP53_DAUCS; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-144C3H family protein