PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027091
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 692aa    MW: 73232.6 Da    PI: 8.4192
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027091genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.2e-125277227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG+rC+F+H++
  DCAR_027091 52 DEADCIYYLRTGFCGYGSRCRFNHPR 77
                 6799********************96 PP
2zf-CCCH36.58.3e-1299123327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtG Ck+G++Ck++H++
  DCAR_027091  99 QPVCQYYMRTGMCKFGASCKYHHPR 123
                  689********************96 PP
3zf-CCCH27.46e-09150168826
                  GGGGTS--TTTTT-SS-SS CS
      zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                  ++++tG+Ck+G +CkF+H+
  DCAR_027091 150 YYLKTGQCKFGVTCKFHHP 168
                  9*****************8 PP
4zf-CCCH37.44.3e-12308333126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+++++tG+Ck+G++Ck++H+
  DCAR_027091 308 PGQPECQHYMKTGECKFGSSCKYHHP 333
                  5789*********************8 PP
5zf-CCCH34.53.5e-11355379226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++++tG+Ck+G +CkF+H+
  DCAR_027091 355 GEKECSYYLKTGQCKFGVTCKFHHP 379
                  7899********************8 PP
6zf-CCCH37.44.3e-12519544126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+++++tG+Ck+G++Ck++H+
  DCAR_027091 519 PGQPECQHYMKTGECKFGSSCKYHHP 544
                  5789*********************8 PP
7zf-CCCH308.9e-10567591327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +lC+++a +G+Ck+G +CkF H++
  DCAR_027091 567 APLCSHYALNGICKFGHSCKFDHPM 591
                  68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2955078IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-95277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-65478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-55677IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-796123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46996124IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-899123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4101124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.634142170IPR000571Zinc finger, CCCH-type
SMARTSM003560.042146169IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6150168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901307335IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6307334IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9309333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5311334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587353381IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5353380IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6356383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4359379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901518546IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6518545IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9520544IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5522545IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4524544IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295564592IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6564591IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7567591IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5567594IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4569590IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MERLQPTEGS SPDPVAEWSS PGGETGLEEP MWQLGLGGGG GGGDDSYPER PDEADCIYYL  60
RTGFCGYGSR CRFNHPRDRN LVVGAMRASG GEYPERVGQP VCQYYMRTGM CKFGASCKYH  120
HPRHGVGSAS SVAISVSGYP LRPGEKERSY YLKTGQCKFG VTCKFHHPHP DGTHVPARAL  180
FPAAATVPSA IYPAMQSPGP SSQQYGVVAG NWQVARPALL PGSYVQGTYG PVILPPGMVP  240
MAGWNPYQAS LSPVASPSAQ SNAGAGPIYG MPQLSSTAPV FAGPYLSMTS PAVHSAYNQK  300
EHAFPERPGQ PECQHYMKTG ECKFGSSCKY HHPAQWSSPK TNFVLSPMGL PLRPGEKECS  360
YYLKTGQCKF GVTCKFHHPH PDGTHVPARA LFPAAATVPS AIYPAMQSPG PSSQQYGVVA  420
GNWQVARPAL LPGSYVQGTY GPVILPPGMV PMAGWNPYQA SLSPVASPSA QSNAGAGPIY  480
GMPQLSSTAP VFAGPYLSMT SPAVHSAYNQ KEHAFPERPG QPECQHYMKT GECKFGSSCK  540
YHHPAQWSSP KTNFVLSPMG LPLRPGAPLC SHYALNGICK FGHSCKFDHP MSTLSYSPSA  600
SSLTDMPVAP YPVGSSMATL APSSSSSELK PDKEAFVTKM STPLSTAAGS VGSILSRNDT  660
LPQSSIQQPG QSSTTSTGSS TPHISEVPTS G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223075.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X3
SwissprotQ84W911e-140C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A175YQ660.0A0A175YQ66_DAUCS; Uncharacterized protein
STRINGXP_009588295.11e-177(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000583231e-177(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-133C3H family protein