PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_027077

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 235aa MW: 26460.5 Da PI: 10.3862

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027077	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	39	60	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C Cg++F +++ L++H + H DCAR_027077 39 CAVCGRRFYNSERLVNHFKQvH 60 9****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.783	37	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	60	IPR007087	Zinc finger, C2H2
CDD	cd06167	2.08E-8	54	189	No hit	No description
Pfam	PF01936	3.5E-5	107	190	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	5.5E-5	142	195	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAAFGNRNWL NSVKVEGNVM KGNMGNVSSG GVKVERSFCA VCGRRFYNSE RLVNHFKQVH 60 EAEQRKRVNQ IESARGSRRV KLVGKFSMKM RKYKNAVRDV LNPHVGNGLS DDLKRAGFWV 120 KAMSDKRDVA GDELGKCILN VIDMRQVECM VLVSDDPEFV SVLKEAKVRG LKTVVVGDRQ 180 DGELKRICDA AFSWKEIILG KAKKQAVSVV GHWKDRDVLK SLEWSYNPET EKTQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017220636.1	1e-171	PREDICTED: uncharacterized protein LOC108197504
Refseq	XP_017220637.1	1e-171	PREDICTED: uncharacterized protein LOC108197504
Refseq	XP_017220638.1	1e-171	PREDICTED: uncharacterized protein LOC108197504
TrEMBL	A0A175YQV6	1e-170	A0A175YQV6_DAUCS; Uncharacterized protein
STRING	XP_002509600.1	3e-94	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12125	19	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-86	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_027077