PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027019
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 170aa    MW: 18940.4 Da    PI: 10.0542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027019genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-054668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ +s++  L  H++ H
  DCAR_027019 46 YECQYCHREYSNSQALGGHQNAH 68
                 99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.25E-74273No hitNo description
Gene3DG3DSA:3.30.160.601.8E-44372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.7E-64571IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.244673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSEKDLHYNV QSDHKLSSSV KLFGIVVTNR EKSPVTEQPD LDNKRYECQY CHREYSNSQA  60
LGGHQNAHRK ERQRSKRAQF LSDPRYRPLG LTLPLISAPA APSGQMVYSG TPSVQSRVLL  120
SGVPLRNRRK VFVGQPCFNT VVPLNVESSR SRSADGRPAL DGLDVDLHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176RQRSKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, ZFP5 and the trichome initiation regulators GL1 and GL3 (PubMed:23506479). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:23506479, ECO:0000269|PubMed:24808098}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:23506479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221724.11e-122PREDICTED: zinc finger protein 5-like
SwissprotQ392653e-16ZFP6_ARATH; Zinc finger protein 6
TrEMBLA0A175YPN11e-121A0A175YPN1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.14e-12C2H2 family protein
Publications ? help Back to Top
  1. Giavalisco P, et al.
    High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome.
    Plant Mol. Biol., 2005. 57(4): p. 577-91
    [PMID:15821981]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  4. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]