PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026671
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 468aa    MW: 51316.1 Da    PI: 6.3257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026671genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09279326455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  DCAR_026671 279 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 326
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.88E-11273330No hitNo description
SuperFamilySSF474596.94E-17273342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17275341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6279326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MESDKMWNSL QFGMEIQAND HNSIPNCYYN PNWDNSMDQG DPFESALSSL VSSPTSNLGT  60
QGKNGEQQNV VLRELIGRLG SICNSGDIYN NNNSTNTSCY NTPLNSPPRL NLSVMDHQIR  120
GGNLQISSDP GFAERAARFS CFGNGIDGKL PKVGGSQRIQ ENKDGCLGML SRSSSPEKGE  180
IGDSMEESSI SEQIPGGEIG LKGQKDVNVK KRKAVPRGKA KETLSAKEAK AGAENDGPNS  240
KRSKADEGNQ KQGKEDSKLP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD  300
LVPGCNKVTG KAVMLDEIIN YVQSLQHQVE FLSMKLSTVN PRTGLNMEDI ISKDIFQSYA  360
SMPQNIYPVD ASAQTFPYAF QSQQGSNLQS NMPNGTKNPL VMNSLTAAIC RNPGMLQPPT  420
DGYNTGIPSQ MSFWDDDLQN VVQMGFGQNQ HENFHASDAT NHMKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212QKDVNVKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220108.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A175YRC00.0A0A175YRC0_DAUCS; Uncharacterized protein
STRINGVIT_05s0029g00390.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-80bHLH family protein