PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_026660

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 366aa MW: 39906.9 Da PI: 8.6296

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026660	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.5e-39	28	87	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a++cprCds ntkfCyynnysl+qPr+fCk+C+ryWtkGGalrnvPvGgg+rknkk+s DCAR_026660 28 PAAINCPRCDSPNTKFCYYNNYSLTQPRHFCKTCKRYWTKGGALRNVPVGGGCRKNKKTS 87 6789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	18	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	30	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.087	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSSDMNKDER NYQNPSSRGK AMSATRPPAA INCPRCDSPN TKFCYYNNYS LTQPRHFCKT 60 CKRYWTKGGA LRNVPVGGGC RKNKKTSRAS SSRPSSGDFK DSSGASSYSD SGGFRFYNSL 120 QFQLGEGLTN FPRFNNISAP PPVGNQLVSS FGDIPTVPLS SNVMSNFTLE PNPGNNLSQF 180 MALNSFPLSS SSSSSSVLKQ DHADKYGGFK EGLLHDTVPS NSTVPSNSNL AYSIESLSSI 240 NQDLHWKLQQ DRLNTMFNNG GDNSNYPRQN GLISSTANYL EHSQSQKPHP LLFQNLEISS 300 KPADESRMEN TGNVSSANLG TDWCFGNSSY APVVNQNPAI SSGLNIADIK ENQAWANFDQ 360 FTTLP*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSSDMNKDER NYQNPSSRGK AMSATRPPAA INCPRCDSPN TKFCYYNNYS LTQPRHFCKT  60
CKRYWTKGGA LRNVPVGGGC RKNKKTSRAS SSRPSSGDFK DSSGASSYSD SGGFRFYNSL  120
QFQLGEGLTN FPRFNNISAP PPVGNQLVSS FGDIPTVPLS SNVMSNFTLE PNPGNNLSQF  180
MALNSFPLSS SSSSSSVLKQ DHADKYGGFK EGLLHDTVPS NSTVPSNSNL AYSIESLSSI  240
NQDLHWKLQQ DRLNTMFNNG GDNSNYPRQN GLISSTANYL EHSQSQKPHP LLFQNLEISS  300
KPADESRMEN TGNVSSANLG TDWCFGNSSY APVVNQNPAI SSGLNIADIK ENQAWANFDQ  360
FTTLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222418.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A175YS11	0.0	A0A175YS11_DAUCS; Uncharacterized protein
STRING	XP_009774290.1	2e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5242	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	5e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_026660