PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_026660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Dof | ||||||||
Protein Properties | Length: 366aa MW: 39906.9 Da PI: 8.6296 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.5e-39 | 28 | 87 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a++cprCds ntkfCyynnysl+qPr+fCk+C+ryWtkGGalrnvPvGgg+rknkk+s DCAR_026660 28 PAAINCPRCDSPNTKFCYYNNYSLTQPRHFCKTCKRYWTKGGALRNVPVGGGCRKNKKTS 87 6789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-27 | 18 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-32 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.087 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MSSDMNKDER NYQNPSSRGK AMSATRPPAA INCPRCDSPN TKFCYYNNYS LTQPRHFCKT 60 CKRYWTKGGA LRNVPVGGGC RKNKKTSRAS SSRPSSGDFK DSSGASSYSD SGGFRFYNSL 120 QFQLGEGLTN FPRFNNISAP PPVGNQLVSS FGDIPTVPLS SNVMSNFTLE PNPGNNLSQF 180 MALNSFPLSS SSSSSSVLKQ DHADKYGGFK EGLLHDTVPS NSTVPSNSNL AYSIESLSSI 240 NQDLHWKLQQ DRLNTMFNNG GDNSNYPRQN GLISSTANYL EHSQSQKPHP LLFQNLEISS 300 KPADESRMEN TGNVSSANLG TDWCFGNSSY APVVNQNPAI SSGLNIADIK ENQAWANFDQ 360 FTTLP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222418.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A175YS11 | 0.0 | A0A175YS11_DAUCS; Uncharacterized protein | ||||
STRING | XP_009774290.1 | 2e-79 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5242 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 5e-45 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_026660 |