PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026531
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 315aa    MW: 35923.1 Da    PI: 4.882
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026531genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-08242291955
                  HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  ke  ++L e  +   k +yp+++++  LA+++gL+++q+ +WF N+R ++
  DCAR_026531 242 KEARQALMEWWNvhyKWPYPTETDKIFLAESTGLDQKQINNWFINQRKRH 291
                  555566665555443689*****************************885 PP
2ELK32.61.7e-11211232122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrK++++++sLk EFs
  DCAR_026531 211 ELKDRLLRKFGSHISSLKLEFS 232
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.4E-2375119IPR005540KNOX1
PfamPF037905.6E-2277118IPR005540KNOX1
SMARTSM012561.9E-21126177IPR005541KNOX2
PfamPF037911.3E-22129175IPR005541KNOX2
SMARTSM011884.6E-6211232IPR005539ELK domain
PfamPF037893.2E-8211232IPR005539ELK domain
PROSITE profilePS5121310.022211231IPR005539ELK domain
PROSITE profilePS5007112.617231294IPR001356Homeobox domain
SuperFamilySSF466891.11E-19232306IPR009057Homeodomain-like
SMARTSM003891.2E-12233298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27236297IPR009057Homeodomain-like
CDDcd000861.00E-11243295No hitNo description
PfamPF059208.0E-17251290IPR008422Homeobox KN domain
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDGLYGHRAD YADKLLMSPE NIMFPSSDYQ NLISSQRFPV YGSDELFSAA SAISESASNS  60
RRSFQQGEDS NNDPSLIKAR IMSHPSYPKL LHAYIECQKV GAPPEIASLL DEIRRENDVY  120
NKHDHVNSCI GADPELDEFM ETYCDILIKY KSDLSRPFSE ASTFLSNIET QLGDLINKAL  180
SADENAVSSD DELSGVEVDV QEGQARGEDR ELKDRLLRKF GSHISSLKLE FSKKKKKGKL  240
PKEARQALME WWNVHYKWPY PTETDKIFLA ESTGLDQKQI NNWFINQRKR HWKPSEDMQL  300
AVMDSISGQY YNDE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220365.10.0PREDICTED: homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS61e-133KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A175YRM80.0A0A175YRM8_DAUCS; Uncharacterized protein
STRINGVIT_01s0127g00210.t011e-141(Vitis vinifera)
STRINGEOY005441e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-122KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]