PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_026386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 23471.1 Da PI: 5.0197 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.5 | 3.4e-36 | 37 | 120 | 1 | 84 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkCa+dC+lapyfp+ ++++f n+hklFG+sn++k++++l++ ++++am++++y+A++ra+dPv G++++i++ q DCAR_026386 37 ACAACKYQRRKCAPDCILAPYFPHLRQRQFLNAHKLFGVSNITKIIRNLEKYDKDEAMRTIIYQADVRASDPVGGCYRIIRDDQ 120 7******************************************************************************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.111 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-34 | 37 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNNKNNNLET REITSNTPTP PPAATNNNIP RCNASQACAA CKYQRRKCAP DCILAPYFPH 60 LRQRQFLNAH KLFGVSNITK IIRNLEKYDK DEAMRTIIYQ ADVRASDPVG GCYRIIRDDQ 120 DRGQYILHGD DQVNFEEINS WGATENSATT LEVKRSYECE ENWEEDVNPK LLPYDRREEF 180 KIEAEEKSFD SVDDFRLKTT DAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 33 | 120 | 7 | 94 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 33 | 120 | 7 | 94 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217509.1 | 5e-83 | PREDICTED: LOB domain-containing protein 22-like | ||||
Refseq | XP_017227882.1 | 5e-83 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A164USU2 | 1e-150 | A0A164USU2_DAUCS; Uncharacterized protein | ||||
STRING | XP_006466020.1 | 7e-50 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-44 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_026386 |