PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_026259

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 340aa MW: 38066.6 Da PI: 8.6732

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026259	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.2e-11	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L+ l+P + ++ sKa +L + ++Y++sLq DCAR_026259 156 SHSLAERVRREKISKRMNILKALVPGC----DQITSKALMLDEIINYVQSLQ 203 8***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.04E-10	150	207	No hit	No description
SuperFamily	SSF47459	3.66E-16	150	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.618	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-16	152	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	156	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-10	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MFLIPDTTSC FPEQSIHDIY KPFSPHQHHS FYDQADPTVQ EALPSANLST DSTGITKIST 60 CINNSSSSAA SAQYDQVTNP AEKRKIKCQP HSMMKGKKPR KETASSSIEK PNNKRSRRSE 120 ANDKKKKRTI RDEAERNGAP TDYVHVRARR GQATDSHSLA ERVRREKISK RMNILKALVP 180 GCDQITSKAL MLDEIINYVQ SLQKQVEILS LKIASINTLF YNCGMNLDAY MVEPEVQNQG 240 TSSLEATNAP DVQLENRNQA TNDIFNTSDG YSLIEEQNHT QATNGIFNTS GGYSLIDTST 300 LLQLQQAQMS YIMSQSQRSK SSFFTSELMQ ASQWIRMHA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217920.1	0.0	PREDICTED: transcription factor bHLH137-like isoform X1
Refseq	XP_017217921.1	0.0	PREDICTED: transcription factor bHLH137-like isoform X1
TrEMBL	A0A164UPM2	0.0	A0A164UPM2_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4116	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_026259