PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026069

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WRKY

Protein Properties

Length: 548aa MW: 60751 Da PI: 6.9006

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026069	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.9	2.4e-29	225	282	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrC+ + +Cpv+k+v+r+++d +++++tYeg+Hnh+ DCAR_026069 225 DGCQWRKYGQKIAKGNPCPRAYYRCSVTpSCPVRKQVQRCSQDMSILITTYEGTHNHT 282 9***********************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-30	208	284	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-26	216	284	IPR003657	WRKY domain
PROSITE profile	PS50811	27.852	218	284	IPR003657	WRKY domain
SMART	SM00774	9.3E-35	223	283	IPR003657	WRKY domain
Pfam	PF03106	6.4E-26	225	281	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MEETLKRKAH GDAFKEEKRS ESSHADDEDR KDEDMPLVKD NELDSAKAEM HEVREENHRL 60 RTYLDKMMKD YQTLQTQFNN IVHDRDSPTK SRPVNDQGHR EQKHETRDEF DVSLSLGRSS 120 SSEIKRENDH KHSSSPKKPV EQDKEGLRLG LDCRFDVQPS VLSKEGVPES SPEHSLDDVK 180 EVGAETWNAQ KSEKAHEEDE VSHQNPAKKA RVSVRVRCDT PTMIDGCQWR KYGQKIAKGN 240 PCPRAYYRCS VTPSCPVRKQ VQRCSQDMSI LITTYEGTHN HTLPIAAHAM ASTTSAAAGM 300 LLSGSSTSGI GSSGAPTTIT TPAELHGLNY YLSNNSASSR PPFYLPNTSI SSSSSYPSIT 360 LDLTSSSSSM TSTFPPRYNL NSSSTNLNFN TSLDSNATLP IFWSNANNYQ LQNYAKNTQI 420 GQSLNFARQH QENLYPYSYM QKNNNDLAQA HQSMQMDKNS IESATKAITA DPNFQSALAA 480 AITSMIGSNN ISGNNVKLQE PSFPVLSSFL ATNSQASNMI RPLPPSLPIS SSKSKSTSPE 540 DNRDQVR*

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MEETLKRKAH GDAFKEEKRS ESSHADDEDR KDEDMPLVKD NELDSAKAEM HEVREENHRL  60
RTYLDKMMKD YQTLQTQFNN IVHDRDSPTK SRPVNDQGHR EQKHETRDEF DVSLSLGRSS  120
SSEIKRENDH KHSSSPKKPV EQDKEGLRLG LDCRFDVQPS VLSKEGVPES SPEHSLDDVK  180
EVGAETWNAQ KSEKAHEEDE VSHQNPAKKA RVSVRVRCDT PTMIDGCQWR KYGQKIAKGN  240
PCPRAYYRCS VTPSCPVRKQ VQRCSQDMSI LITTYEGTHN HTLPIAAHAM ASTTSAAAGM  300
LLSGSSTSGI GSSGAPTTIT TPAELHGLNY YLSNNSASSR PPFYLPNTSI SSSSSYPSIT  360
LDLTSSSSSM TSTFPPRYNL NSSSTNLNFN TSLDSNATLP IFWSNANNYQ LQNYAKNTQI  420
GQSLNFARQH QENLYPYSYM QKNNNDLAQA HQSMQMDKNS IESATKAITA DPNFQSALAA  480
AITSMIGSNN ISGNNVKLQE PSFPVLSSFL ATNSQASNMI RPLPPSLPIS SSKSKSTSPE  540
DNRDQVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	210	284	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216732.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-118	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A164UKB0	0.0	A0A164UKB0_DAUCS; Uncharacterized protein
STRING	XP_010256554.1	1e-134	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-59	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	DCAR_026069

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]