PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026020
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 453aa    MW: 50740 Da    PI: 8.3759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026020genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.5e-15249295455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRdriN+++ +L++l+P+a      K +Ka++L +++e++k+Lq
  DCAR_026020 249 VHNQSERKRRDRINQKMKTLQRLVPNA-----NKTDKASMLDEVIEHLKQLQ 295
                  5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.54E-15241299No hitNo description
SuperFamilySSF474591.44E-18242306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.723245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17249305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12249295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSRKEYTVPK GDLWGHLRQA EKVGEETEGN RRSSHVHDHQ KSYNHLVCMS NYDITELGWE  60
NGQPLMHEHV GILPAVPDSK TTWDRTDDTL ESIVHQATYP NVNLPEFDHH LNQNHQLTNK  120
NSIVTPSTRI WGENSNHVEM SPPVYTKKRV QSSEHSDQCR GMNNLTISHQ NHADKRPCGS  180
GNATFAKNND ATMMTWASLE SPRSMRSKTK PVDEDSACHA GSEIPDEEPV NKGETAPSHS  240
SKRSRVAAVH NQSERKRRDR INQKMKTLQR LVPNANKTDK ASMLDEVIEH LKQLQAQVQM  300
MSSRNIPHMM MPLGMQQQLQ MSLLARMGMG AAPGLNFGSM LDMTNIARTA SQPHPSLIHP  360
NSATTAVTPT FIPPQFMFPP MISRQVQSQA NMVQEATGTN PVPFSDPYRA LLTQSMNMEL  420
NNKMAAAVYQ QQLNQAAQTT NGTSNPKHVQ RE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258ERKRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216368.10.0PREDICTED: transcription factor PIF7-like
TrEMBLA0A164UJ140.0A0A164UJ14_DAUCS; Uncharacterized protein
STRINGEOY219711e-127(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-39bHLH family protein