PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026014
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 464aa    MW: 51404.8 Da    PI: 8.756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026014genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001593111321
                  ETTTTEEESSHHHHHHHHH CS
      zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                  C+ Cgk F ++  L  H +
  DCAR_026014  93 CKECGKDFESWKALFGHVK 111
                  **************99976 PP
2zf-C2H211.50.00092303325123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+Cp C++ F++   L  H  +H
  DCAR_026014 303 YECPSCNRAFNTFQALGGHRASH 325
                  99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.23931IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-6931IPR007087Zinc finger, C2H2
SuperFamilySSF576679.72E-7931No hitNo description
PROSITE profilePS5015710.118931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576679.72E-786113No hitNo description
SMARTSM003550.1391113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.59891118IPR007087Zinc finger, C2H2
PfamPF139126.7E-692115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576673.29E-7301325No hitNo description
SMARTSM003550.2303325IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91303330IPR007087Zinc finger, C2H2
PfamPF139123.2E-10303327IPR007087Zinc finger, C2H2
PROSITE patternPS000280305325IPR007087Zinc finger, C2H2
SuperFamilySSF576673.29E-7364391No hitNo description
SMARTSM003551.2369391IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974369391IPR007087Zinc finger, C2H2
PfamPF139128.9E-10369392IPR007087Zinc finger, C2H2
PROSITE patternPS000280371391IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEKDHEANYL CKLCSKSFPC GRSLGGHMRS HVIYPTDQEK VPKVKRVPAG DKGGTNTLVE  60
SDGAAYGLRE NPKKTYRFKD SSEDTPLHVN KICKECGKDF ESWKALFGHV KCHSDKITRT  120
GVVEQDSWTS ADQSENGKAK PRKKRSVRGT KRHFKMESSG TTATSSSISY NANASSSVSE  180
NEQEQEEVAL CLIMLSKDVT SWSGLKSIGE SSVKTNKSEI KAGGLIMLND KLKSKVVEEL  240
EFQVSEVGME RTLINASKSD EKTDLGIKKI TSSKRKFLDI TETEYKVKST EMVKKELDKR  300
KKYECPSCNR AFNTFQALGG HRASHKKMNG CFGMKNDHEN GPDNSSPMAH EVTAEASSGT  360
KKLSKEGSHE CLICFKVFSS GQALGGHKRS HLIAEAKQNQ NQNQNQNQNT TSSSIVIKPV  420
PEIRDFLDLN LPAPDEDDTS TSELGFRQWW LGSNHHETLL GLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217873.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A161Y8Z60.0A0A161Y8Z6_DAUCS; Uncharacterized protein
STRINGEOY220001e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.16e-22C2H2-like zinc finger protein