PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025983
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SRS
Protein Properties Length: 327aa    MW: 35562 Da    PI: 8.0489
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025983genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.51.5e-67962473153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskke 99 
                   g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrer qqlaa++++++++ +e+++  + ++ ++  +   ++  ++   +++ 
  DCAR_025983  96 GGSISCQDCGNQAKKDCTHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLQQLAALHRRREQQDQEDDNVFHYQTlQIPPKRLKDTYATAIPIASSG 193
                  5789****************************************************999888877666555544442444444444444444455667 PP

       DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  le +++P+ev+s+avfrcvrvssv ++++++aYqt+v+igGh+f+GiLydqGle
  DCAR_025983 194 LELANFPAEVESSAVFRCVRVSSVGNSDNQYAYQTSVNIGGHLFRGILYDQGLE 247
                  9999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-6398247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-28100142IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-26199246IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MANFFSLGGG GDGGGNHQTR QGNNNNNNEI NPESWFLLSR NNTHNHPDQV DLHNKGFELW  60
QPQDYPSGLN LVSDHSRSND FFMLRSGASS STSGGGGSIS CQDCGNQAKK DCTHMRCRTC  120
CKSRGFHCQT HVKSTWVPAA KRRERLQQLA ALHRRREQQD QEDDNVFHYQ TLQIPPKRLK  180
DTYATAIPIA SSGLELANFP AEVESSAVFR CVRVSSVGNS DNQYAYQTSV NIGGHLFRGI  240
LYDQGLEISH RHQLPGRDQQ VNNLIRNASS SPGAEPDGSG AGTSRGGGGG APAPSQATTF  300
LDPSLYHSAS LNSFMAGTQF FPPPRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217748.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A164UI540.0A0A164UI54_DAUCS; Uncharacterized protein
STRINGEOX909426e-76(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.16e-53Lateral root primordium (LRP) protein-related