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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_025485 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 281aa MW: 31544.3 Da PI: 8.9096 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_025485 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.1 | 2.3e-06 | 106 | 125 | 6 | 25 |
-SGGGGTS.--TTTTT-SS-S CS
zf-CCCH 6 CrffartG.tCkyGdrCkFaH 25
C+ ++ +G C+yG+rC+F H
DCAR_025485 106 CK-WYTSGkPCPYGNRCRFPH 125
88.999999**********76 PP
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2 | zf-CCCH | 30.7 | 5.3e-10 | 188 | 213 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC+++ +C+yG++C FaHg
DCAR_025485 188 WKTRLCNRWETVKECPYGSKCFFAHG 213
8************************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.018 | 59 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 60 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0093 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 105 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-6 | 105 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 106 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 183 | 217 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-8 | 184 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 187 | 214 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 187 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-7 | 188 | 213 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MENIEQARDI RGRFRTDDEP FGVGGNADHC RSFKRPRVSE NIRDSRLPNL NNTSRAGISF 60 KSQPCCDFRT RGCSYGTNCR YSHEFRGIDQ GELVAKEIGL GYNNVCKWYT SGKPCPYGNR 120 CRFPHEDVKN GVDEFRKSHA ISIAGYNQGL SLKQDNRLGG SGFGAKQDNT PVDVSLRANQ 180 AHQRHMSWKT RLCNRWETVK ECPYGSKCFF AHGLAELLPG PSARNKNQSL RSVAGIAKDE 240 KNGVAQVEGK EECSIRWKTV NKLVGIYADW IEDMPSQPDM *
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