PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025437
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 315aa    MW: 35017.7 Da    PI: 7.789
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025437genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.39.9e-33491632115
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.ksk 98 
                   g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak  i+el+ ++ ++ ++++ ++   sas+  +++++ ++  + +
  DCAR_025437  49 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKNDIDELPPLQVPPGTFSQFHQAMLSASHGVNAAQSVEKSgQVN 146
                  689*************************************************************9999977766666666664444433333322333 PP

          TCP  99 ksqksaasalnlakesr 115
                   +++ + s++n+  +s 
  DCAR_025437 147 WNDHLELSTSNYWSNSD 163
                  33333333333332222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3051179IPR005333Transcription factor, TCP
PROSITE profilePS5136931.7451109IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSSSKEADY TPKQEDKSSE SKILSKASSS STSWSRLKDP RIVRVSRAFG GKDRHSKVCT  60
VRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AAKNDIDELP PLQVPPGTFS  120
QFHQAMLSAS HGVNAAQSVE KSGQVNWNDH LELSTSNYWS NSDGNLRDQM KSKEIVEETK  180
RKQDGDLDQG SNDAYTASSN FFERGNQSNP PAGMLINNMI PISNPSYLRW DPSNLSRSHT  240
EDIPISQSSS LSMPSGSQFV VYPHAREFDP KQMFNFQMLG SNIASQNSPF SNPPFTPFHL  300
SRDSYSGSAP NKDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1756110155Putative transcription factor PCF6
5zkt_B2e-1756110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217580.10.0PREDICTED: transcription factor TCP17
TrEMBLA0A161ZM290.0A0A161ZM29_DAUCS; Uncharacterized protein
STRINGEOY036998e-84(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-47plastid transcription factor 1