PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 410aa MW: 45762.3 Da PI: 4.3502 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.5e-19 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g DCAR_025387 48 RFIGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 97 689******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.29E-31 | 47 | 104 | No hit | No description |
SuperFamily | SSF54171 | 3.07E-19 | 48 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-27 | 48 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.414 | 48 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 48 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-34 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGRKRKAGEA TDDQDRSSGE ADMAWDKMVK DAAAASAVLS GARGGRKRFI GVRQRPSGRW 60 VAEIKDTIQK IRVWLGTFDT AEEAARAYDE AACLLRGANT RTNFWPCSQS SSSAPALPPK 120 ISNILLHRLK ARNNSLAASS NSPVPVNHEE KAQQGYEEEV TEFSDAQFTD FLNDMEDYIP 180 INEMLNNAGA STGEHTNTIE YTCTSFDSCL TDQNLSPQDQ GRDFDWVHNW TDHSEQSSGG 240 QCSSGEEYVE PDFEEDEGTE LCATDFQFVD ELGSTYCSPF EITEEIALPI EQAVCDGEPT 300 MISEAMRRMK YERKFSASLY AFNGITECLK FKLKSANATH KVGSDQLSKL RNACNKNQQD 360 QKEAEEERVK TPEEELEASP YMESPFHSNE NELSLWSSLD LQPICFVNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-13 | 41 | 104 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217352.1 | 0.0 | PREDICTED: uncharacterized protein LOC108194927 | ||||
TrEMBL | A0A161ZLZ2 | 0.0 | A0A161ZLZ2_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_008867m | 1e-132 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-21 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025387 |