 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
DCAR_025382 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
NAC |
| Protein Properties |
Length: 331aa MW: 37670.3 Da PI: 6.2921 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_025382 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 182.3 | 1.2e-56 | 3 | 129 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
lppGfrFhPtdeel+++yL +k+++k+++ +i+evd+++vePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat+sgyWkatgkdke+++ +++
DCAR_025382 3 LPPGFRFHPTDEELITHYLSPKIHNKSFSS-AAIAEVDLNNVEPWELPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATESGYWKATGKDKEIFK-GKT 98
79*************************999.78***************888999****************************************.999 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129
lvg+kk+Lvfykgrap+g kt+Wvmheyrle
DCAR_025382 99 LVGMKKILVFYKGRAPRGDKTNWVMHEYRLE 129
*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MELPPGFRFH PTDEELITHY LSPKIHNKSF SSAAIAEVDL NNVEPWELPW KAKMGEKEWY 60
FFCVRDKKYP TGLRTNRATE SGYWKATGKD KEIFKGKTLV GMKKILVFYK GRAPRGDKTN 120
WVMHEYRLEG KHSMDYSSKT SRNEWVISRI FHKSAGGVKS HIEALAQHGN CSEEVQQQVA 180
SNLPPLLDVS RTLQAEAVPV SKETSYSSQI EDIKFSDSMT EASVMQSSFY SYPSIPIINP 240
HLSSPIPLQF PEYYAVQDES SMRYIMEYNG EVTEMKQTCK TEFSQDTNGG MSTDVSSVVS 300
NHFDTRSYED QEYHPISSSG PVDLGCLWNY *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Vidal EA,Álvarez JM,Gutiérrez RA
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
Plant Signal Behav, 2014. 9(3): p. e28501
[PMID:24642706] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643]
|
