PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025311

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YC

Protein Properties

Length: 284aa MW: 31460.7 Da PI: 4.7412

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025311	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.5	7.1e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v+r ++fdfl ++v + DCAR_025311 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVSSLHLKHCVQRYNVFDFLKEVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TVSSLHLKHC VQRYNVFDFL KEVVSKVPDY THTEAGGDDV NMTKRRKITS EEANDSDEES 120 KRNRVHEPSQ VSSSGSKGRG RGRGRGRGRG RGVRSADKEA AQTDFDYDSC NNNRILVPVA 180 ATEVADDASE LKEVPKDSIN ISNNSNQASR NFDLNADLDD NAIDKTPTEA PSLPSATPTA 240 PRSEDEYPGW PLSEMDRIPI DPVDLAKLNS RMDDDDEDYD EEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	150	RGRGRGRGRGR
2	142	151	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215500.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A164U015	0.0	A0A164U015_DAUCS; Uncharacterized protein
STRING	XP_006471322.1	6e-95	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-69	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	DCAR_025311