PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025094
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 429aa    MW: 46549.7 Da    PI: 8.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025094genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.7e-16248294455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  DCAR_025094 248 VHNQSERKRRDRINQRMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 294
                  6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-18242306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.962244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13248294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-17249298No hitNo description
SMARTSM003537.0E-18250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MQCNPRESDY EVAELTWENG HLSMNGLGQP RQPSTTKYTW DKTCVGGTLE SIVDQATFVP  60
NHKLLSNSNT DLVPWFNNHK SMLASTNNTA TTKVTASTGV VDALVPCANM REGSSLLAMD  120
SGFGTHVESC SGATVPFEKV RGPRVRVPVA NEWSSCPDNS VSESATFCKD SRQVTADTSE  180
KEFGAGGFTS TSTGSPGNTS SGKQCTGGED HDSVCHSKRQ KATVHEQTKK KANGKSSVSA  240
KRSRAAAVHN QSERKRRDRI NQRMKTLQKL VPNSSKTDKA SMLDEVIDYL KQLQAQVSMM  300
NRMNMSPMML PFAMQQQLQM QMMAPMMGMG MGMGMGMGHV MDLSTAMACR SNMAGVAPAV  360
LHPSTFISPL NAWEGGRADH RVHTQASVMQ DPMATFLAAC QSQPMTMDAY SRMAALYQQL  420
HQNPGPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215606.10.0PREDICTED: transcription factor UNE10-like isoform X1
SwissprotQ8GZ382e-86UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A161X6H90.0A0A161X6H9_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s14430.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]