|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
DCAR_024990 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
Family |
C3H |
Protein Properties |
Length: 311aa MW: 33685.6 Da PI: 9.1411 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_024990 | genome | ARS-USDA | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 118 | 141 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
kt++C + Ck+Gd+C+FaH
DCAR_024990 118 KTKICTKYNSPEGCKFGDKCRFAH 141
8999999999999*********** PP
|
2 | zf-CCCH | 34.9 | 2.6e-11 | 277 | 302 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+ C +fa+ G C +GdrC+FaHgp
DCAR_024990 277 FKTKMCENFAK-GSCTFGDRCHFAHGP 302
69*********.*************96 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 7.554 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.9 | 71 | 81 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-10 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-7 | 115 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.035 | 116 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.817 | 116 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-5 | 118 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.46E-15 | 177 | 253 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.1E-11 | 181 | 251 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.8E-15 | 182 | 250 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.32 | 182 | 246 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.86E-14 | 184 | 247 | No hit | No description |
Pfam | PF00013 | 3.0E-10 | 184 | 248 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-17 | 270 | 307 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-9 | 275 | 307 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-7 | 276 | 302 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.093 | 276 | 303 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-8 | 277 | 302 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MLLLGTAFLR DPSLPHSSKN YFEMGIVALK RDLHPNHPVS VPIINWFLFE YKPILYMTIC 60 IASLGKITSG CQFGEGCHFL HYVPGGYSAV GQMTNHGGPT ARNPGLPSFA DAPSPTLKTK 120 ICTKYNSPEG CKFGDKCRFA HKDEFGRPGF EDRRSFGSMP QYGRRAEAPS PGLAAAANFG 180 SSATAKISID ASLAGPIIGK GGVNSKQICR ETGVKLAIRD HDTDPNQRNI ELEGNFEQIK 240 IASDMVHELI MNLRAATGGP ARNPRSMPMQ APPANNFKTK MCENFAKGSC TFGDRCHFAH 300 GPNELRKTAP *
|