PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_024960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 645aa MW: 71549.7 Da PI: 6.5037 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.3 | 7.2e-10 | 96 | 120 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ DCAR_024960 96 FKTKLCCKFRA-GTCPYVTNCNFAHS 120 69*********.*************8 PP | |||||||
2 | zf-CCCH | 17.9 | 5.7e-06 | 175 | 195 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ DCAR_024960 175 CKKFFTEEGCPYGDNCTFVHD 195 99999999************7 PP | |||||||
3 | zf-CCCH | 42.9 | 7.8e-14 | 238 | 263 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg DCAR_024960 238 WKTRICNKWEQTGYCPFGNKCHFAHG 263 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.07E-7 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-14 | 93 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 95 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-7 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.4 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-8 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-17 | 233 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-10 | 234 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.826 | 237 | 265 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-9 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-11 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 3.28E-20 | 453 | 524 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 5.0E-18 | 473 | 520 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13639 | 3.2E-13 | 474 | 517 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 2.75E-11 | 474 | 520 | No hit | No description |
SMART | SM00184 | 1.1E-4 | 475 | 516 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.283 | 475 | 517 | IPR001841 | Zinc finger, RING-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MDYGRESGNV VHIIPTNQVI DVEKWGSGSA DQAIWATEED YGAWNREASV DVNSNYDGKQ 60 SQSRSGSEPP NKKLRNAQSV DLQSNNRSKA IGKMFFKTKL CCKFRAGTCP YVTNCNFAHS 120 IEELRRPPPN WQEIVAAHEE EQGISSEPRE EFQIPSLDSN VFPPEMQRSS KGRHCKKFFT 180 EEGCPYGDNC TFVHDEQSRA RESVAISLGP GSGGGYSGGT VNTAGNVLSP STLKPSNWKT 240 RICNKWEQTG YCPFGNKCHF AHGAEELHRY GGGLMDSEGK DFSSPLDAKL GMAASKSPAD 300 NLAASVNHSD NYHVGGQSQR LANIPYGYDN LSSLSKEFEN LSSVTLAPSQ LDCQSLAGRL 360 ATALSAHRKM PPSNVDANAP EQGHYYTSPP LTIIITIIIL VFLLVGFFTL YFCKCFFQNF 420 LESRVGQRTS SNRTAADNPN AAAFTGLDPA IVNTFPTFTY SSVKEYRRAK YSLECAICLL 480 EFEDDHIIRL VKICSHAFHQ DCIDLWLEMH KTCPVCRRNL DSILEGTPSC TPSHDEEDSM 540 KDSVAITIRD DHEGTNHGEK KRGTNDFIGR SNTTGHSIFT SREEEDRFTL RLPDHVTQEL 600 IQANRWPKNL HTSREPKRNV YIVGEGSDGN IKNVKVPPIF LDNG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017215698.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q84UQ3 | 2e-99 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A161Y6B1 | 0.0 | A0A161Y6B1_DAUCS; Uncharacterized protein | ||||
STRING | Migut.N01445.1.p | 1e-141 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-101 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_024960 |