PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024903
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GeBP
Protein Properties Length: 390aa    MW: 43420.5 Da    PI: 6.8955
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024903genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.21.4e-34153249298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lf rl+se+DeivlL G+id+++k+g++ps di af+e +++ +s  ++k+q+v+KirrL+kKf ++ k+ ++g +p++s++h+ k+felskkiWgs
  DCAR_024903 153 LFARLFSEKDEIVLLEGMIDYREKKGADPSLDIVAFHESIEDMLSCSATKNQIVDKIRRLRKKFVNNLKRGQNGGDPVISRPHEYKSFELSKKIWGS 249
                  699********************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-29154248IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVPKRQPHDL PPPIHSSESE SEDSSSSDDS DSEPQQLTQP RPQEPHQDSQ ESSGSDADSG  60
SDAESDSSSD KAQMPPSVVS PQPKKPTSTP AQLKANGKRP AEVEQGDKVS KSKKSKNVEK  120
VDKGSKSVGK VDKGPEKSKL SNGEGSEDKK TALFARLFSE KDEIVLLEGM IDYREKKGAD  180
PSLDIVAFHE SIEDMLSCSA TKNQIVDKIR RLRKKFVNNL KRGQNGGDPV ISRPHEYKSF  240
ELSKKIWGSE VQGSEVDGDS KGRNGRKRNK KDDSKKVDNG GSKTPLRVVR KESDIDEEVM  300
HRNEVETEDC WSLYPFLCAS IESEAIKNFK GPMSPKEYVK KVVSRLEKEK ATELEHEWND  360
YIMMEQQVYV KRVTTISKQA EVAMKVMKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215317.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A161ZKW80.0A0A161ZKW8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-23DNA-binding storekeeper protein-related transcriptional regulator