PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024900
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 154aa    MW: 18002.6 Da    PI: 9.6698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024900genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-081363555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  + +E++RR +++  + eL +l+P + +  ++  s  + L +A +YIk+Lq
  DCAR_024900 13 RKTIEKNRRTHMKGLYTELGSLIPRQNHRLDQAKSLTDQLDEAEKYIKKLQ 63
                 678**********************6566666677789************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.48E-4667No hitNo description
PROSITE profilePS508889.489862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-111081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-91055IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-51463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.9906.6E-45698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDPNQSSSSK ADRKTIEKNR RTHMKGLYTE LGSLIPRQNH RLDQAKSLTD QLDEAEKYIK  60
KLQGKLEKMK EKRERLMRDN PNARLYGGLA TRAQIEIHES GDALVLNLVT DLECEFMFNE  120
TIRMCHERRV GYHQCKLFRH REFSIPHYTL QGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216762.13e-63PREDICTED: uncharacterized protein LOC108194323
TrEMBLA0A161Y6741e-110A0A161Y674_DAUCS; Uncharacterized protein
STRINGVIT_00s0479g00020.t012e-36(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-19bHLH family protein