PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_024631

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 298aa MW: 32972.7 Da PI: 6.1176

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_024631	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.4	8.1e-28	23	118	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e +r ++ ++s +++ ++l DCAR_024631 23 RWTRQEILVLIQGKRVAENRVRRGRmsgpafgsgqAVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETGReAEATESFWVMRNDL 118 8*******************986666677777588*****************************************9445555667777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-12	23	114	No hit	No description
PROSITE profile	PS50090	6.353	23	90	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.6E-5	23	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEAAETEPPS AGDEANRVAR LPRWTRQEIL VLIQGKRVAE NRVRRGRMSG PAFGSGQAVE 60 PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKIKEWE TGREAEATES FWVMRNDLRR 120 EKKLPGFFDR EVYDILDSSD DNAAAANPNP LPLPPPPAVF DSGRSAAADD GLFSDSDQQH 180 HDHDIVNPPP LALPLPSTSD PDVAATHEKQ PSLNPDVATT QEGRKRKRPA SEGDGEMHLQ 240 HQLIETLERN GTILSSQLEI QNNNFQSDME LRKDHGNSLI AVLDKLADAL GRIADKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217159.1	0.0	PREDICTED: trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-106	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A164TGR7	0.0	A0A164TGR7_DAUCS; Uncharacterized protein
STRING	evm.model.supercontig_2461.1	1e-122	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-99	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_024631

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]