PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024556
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 483aa    MW: 51862.2 Da    PI: 6.5986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024556genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.7e-124972326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 ++ C +++rtG C yG++C+F+H+
  DCAR_024556 49 EADCIHYLRTGSCDYGAKCRFNHP 72
                 689********************9 PP
2zf-CCCH30.85.1e-1093119127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rt  CkyG++C ++H++
  DCAR_024556  93 FGEPICQYYMRTRMCKYGASCIYHHPK 119
                  5789*********************96 PP
3zf-CCCH34.72.9e-11139165127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++e+C++++++G+CkyG +CkF+H++
  DCAR_024556 139 PGEEECSYYLKSGQCKYGMTCKFHHPQ 165
                  589**********************97 PP
4zf-CCCH33.95.5e-11304328226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++  C+++++tG+Ck+G++Ck+ H+
  DCAR_024556 304 GQDKCQHYLKTGECKFGSSCKYDHP 328
                  6778********************9 PP
5zf-CCCH29.21.6e-09350375227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +t+ C+ +a  G Ck+G +CkF H++
  DCAR_024556 350 GTPVCSQYAMDGVCKFGHSCKFDHPM 375
                  89**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-44673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0614674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-64975IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-94972IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-55272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.41392120IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-492119IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-793119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-694121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-497121IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709138166IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178302330IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8304328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5305329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4308327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6345374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357348376IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4348375IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6349375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4352374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MERKVIQGET SLEEPMWNLG LGDGSKDDSD NGGDSGGDGA NGYPERTDEA DCIHYLRTGS  60
CDYGAKCRFN HPLDRNSVND AMRAIEGELP ERFGEPICQY YMRTRMCKYG ASCIYHHPKH  120
EGGSASSVAI NIFGYPLRPG EEECSYYLKS GQCKYGMTCK FHHPQPAGIH ILAPGPLLAT  180
PVVPVLYPTI QSPGPLSQQY GVVVGNWPAA MPTVLLGSYI QGLYGEVIFS PGIVPMAGWN  240
PYQAPMNSIA SPSALSGLGA EHIYGMTQLS SSTPDYVGPY LSMTSPAGPS SSNQKDHSFP  300
ERPGQDKCQH YLKTGECKFG SSCKYDHPTQ WSATNTNFIL SPMGLPLRQG TPVCSQYAMD  360
GVCKFGHSCK FDHPMSTLSY SPPTSSLSDI HVSPYPVGLS TTTLAPSSLS MKLKPEVTAR  420
SNKEDFTTKK LTSASSTASS VSSISSQNLP LLESGIQQSI QSSKSSADSS ITPHVSDVRT  480
SV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218649.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
TrEMBLA0A161ZK350.0A0A161ZK35_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-126C3H family protein