PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_024556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 483aa MW: 51862.2 Da PI: 6.5986 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 8.7e-12 | 49 | 72 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C +++rtG C yG++C+F+H+ DCAR_024556 49 EADCIHYLRTGSCDYGAKCRFNHP 72 689********************9 PP | |||||||
2 | zf-CCCH | 30.8 | 5.1e-10 | 93 | 119 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rt CkyG++C ++H++ DCAR_024556 93 FGEPICQYYMRTRMCKYGASCIYHHPK 119 5789*********************96 PP | |||||||
3 | zf-CCCH | 34.7 | 2.9e-11 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e+C++++++G+CkyG +CkF+H++ DCAR_024556 139 PGEEECSYYLKSGQCKYGMTCKFHHPQ 165 589**********************97 PP | |||||||
4 | zf-CCCH | 33.9 | 5.5e-11 | 304 | 328 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG+Ck+G++Ck+ H+ DCAR_024556 304 GQDKCQHYLKTGECKFGSSCKYDHP 328 6778********************9 PP | |||||||
5 | zf-CCCH | 29.2 | 1.6e-09 | 350 | 375 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t+ C+ +a G Ck+G +CkF H++ DCAR_024556 350 GTPVCSQYAMDGVCKFGHSCKFDHPM 375 89**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-4 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.413 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-7 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 144 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-4 | 302 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 302 | 330 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 304 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 305 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 308 | 327 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 345 | 374 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.357 | 348 | 376 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 348 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 349 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 352 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MERKVIQGET SLEEPMWNLG LGDGSKDDSD NGGDSGGDGA NGYPERTDEA DCIHYLRTGS 60 CDYGAKCRFN HPLDRNSVND AMRAIEGELP ERFGEPICQY YMRTRMCKYG ASCIYHHPKH 120 EGGSASSVAI NIFGYPLRPG EEECSYYLKS GQCKYGMTCK FHHPQPAGIH ILAPGPLLAT 180 PVVPVLYPTI QSPGPLSQQY GVVVGNWPAA MPTVLLGSYI QGLYGEVIFS PGIVPMAGWN 240 PYQAPMNSIA SPSALSGLGA EHIYGMTQLS SSTPDYVGPY LSMTSPAGPS SSNQKDHSFP 300 ERPGQDKCQH YLKTGECKFG SSCKYDHPTQ WSATNTNFIL SPMGLPLRQG TPVCSQYAMD 360 GVCKFGHSCK FDHPMSTLSY SPPTSSLSDI HVSPYPVGLS TTTLAPSSLS MKLKPEVTAR 420 SNKEDFTTKK LTSASSTASS VSSISSQNLP LLESGIQQSI QSSKSSADSS ITPHVSDVRT 480 SV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017218649.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A161ZK35 | 0.0 | A0A161ZK35_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058323 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-126 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_024556 |