PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024331
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 1432aa    MW: 161943 Da    PI: 6.4603
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024331genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.94.9e-31491412103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++++ +isw+++g+sf v+d++ f+k++Lp yF+h+nf+SFv QLn YgFkk++ ++         we+++k+F++gk +ll +i+
   DCAR_024331  49 FLNKVYELVDDPKTNAIISWTADGTSFTVWDHHMFTKNILPLYFRHDNFSSFVYQLNNYGFKKTSWDN---------WEYENKWFQQGKDDLLVNIR 136
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rk+++
   DCAR_024331 137 RKNQS 141
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-3140133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-4245138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-2845138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-144972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2649138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-148799IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-14100112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF525403.82E-29656693IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525403.82E-29757974IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3007.8E-30765914IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000092.43E-15767857No hitNo description
SMARTSM003822.4E-11768920IPR003593AAA+ ATPase domain
PfamPF000042.4E-12772855IPR003959ATPase, AAA-type, core
Gene3DG3DSA:1.10.8.608.1E-14920973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007062Biological Processsister chromatid cohesion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MEGVTSEQTE ANEWYHKRCI TLAGDAHGCG RSDRRLITAN RRGLKVPPFL NKVYELVDDP  60
KTNAIISWTA DGTSFTVWDH HMFTKNILPL YFRHDNFSSF VYQLNNYGFK KTSWDNWEYE  120
NKWFQQGKDD LLVNIRRKNQ SSSVAKRNRA RGLNSSDNLG YEAPSETENS EKNQMKLEVQ  180
ELVRKQEIME KELGTVKEQI ESLFKQQKIV ISMFSAILPQ FGQHLHQNAI GQGVMEDAKL  240
EKEIAEKNQY ENGMELVVAD HYTSQQNSLF DSGNLVEDAD KCSFLEKLMA MDENQELQGE  300
LANQQSSIVM ELEGLMTEAE FGGTARRQPQ HLHQNAIGQG VMEDAKLEKE IAEKNQYENG  360
MELVVADHYT SQQNSLFDSG NLVEDADKCS FLEKLMAMDE NQELQGELAN QQSSIVMELE  420
GLMTEAEFGG YIEFMSQWLE ANSNLHDDLD FDDDFQPPFP DDDDHTPTHT PPIPQSQPPT  480
RTDSNKRPQS PPPIPTIPDN FASEEASRKR SRIEPQVVVD EIPANTSANP AAAVAVDDDE  540
DWLPPPVHQV PQPIEEDEVP EETIVSRYAS RIDGDFVPVT GPCGDRVYAK ISRFGFDDST  600
KKNKLHSNEY SNGLIAEPVS LLMQRVEQDA VQKALLESFG PEGDVILPKV PVINEKLWVD  660
KYSPNSFMEL LSDEQTNREV LLWLKQWDSC VFGSEIKTTT EDVLSSLRRH TSVAQHQKAN  720
KSYIGKNKET WQNKENFREY KMLDQENNDS KGTQDLGNRN RKGYATPEQK ILLLCGPPGL  780
GKTTLAHVAA RHCGYRVVEI NASDDRSSST IEAKILDVVQ MNSIMADSKP KCLVIDEIDG  840
ALGDGKGAVD VILKMVSADK KFNTGKEQTH EDQSGKGSSK KKSRDTSLLR PVICICNDLY  900
APALKSLRQV AKVHVFVQPT VSRIVNRLKY ICSKEGMKAS SIALTALAEY TECDIRSCLN  960
TLQFLNRKKE TLNMIEISSQ VVGRKDTSKS FFDIWKEIFQ KKRVKQERKA SSGCKNVWNE  1020
FEYLHSLISN RGDYDLVMDG IHENILKLHY HDPMMKKTVK CMQNLEVSDI VHQYIMRTQK  1080
MSLHVYQPAI AISIHGVIAQ VEKPNIEWPK SFQRFRTTLM EKVDLLHLWH HNITPYISRH  1140
LTIKSFVEDS ISLLLHILSP PTLRPVALHL LSEKEKKDLV QLVNTMVSYS VTYKSIKPNL  1200
LSSNLRHEVG VDASVLSFDP PLVDLIRFKD YTSSHFVLAL AMKQVLLHEV EKQKILQAGI  1260
NRSVHLTDVC KENKNLAMDK NGINRSTHLT DVCKKNQTME MDKNGRIQSS RSHSVSVKKA  1320
VDVLNPSEAR QCEKAAPPVS SNLSSSVNSS VAIKLSSTVS TKKPSRGNFN FFERFKKVSS  1380
EGSQATDTVQ RRPATSERDS RPFLFKFNEV HNYCSSSLPN SPGHSSLLGK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-214614317125Heat shock factor protein 1
5d8k_B9e-22461422109Heat shock factor protein 2
5d8l_B9e-22461422109Heat shock factor protein 2
5d8l_D9e-22461422109Heat shock factor protein 2
5d8l_F9e-22461422109Heat shock factor protein 2
5d8l_H9e-22461422109Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215856.10.0PREDICTED: chromosome transmission fidelity protein 18 homolog isoform X1
TrEMBLA0A164T8F50.0A0A164T8F5_DAUCS; Uncharacterized protein
STRINGEOY053490.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-34heat shock transcription factor A9