PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024216
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 638aa    MW: 73494.8 Da    PI: 8.3402
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024216genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08432471345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eE e l++  k++G++ Wk+ a+++   R + q+k+ ++
      DCAR_024216 432 EWTEEEKEMLLEQYKKHGNN-WKLMAKEFK--RHRLQVKDTYR 471
                      6*****************99.********7..78888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6352425IPR017877Myb-like domain
SMARTSM007176.8E-4356427IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-6356420IPR009057Homeodomain-like
PROSITE profilePS5129311.531428478IPR017884SANT domain
SMARTSM007175.1E-6429476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-8430474IPR009057Homeodomain-like
SuperFamilySSF466898.05E-9431486IPR009057Homeodomain-like
CDDcd001674.02E-5432474No hitNo description
PfamPF139216.8E-14433490No hitNo description
Gene3DG3DSA:1.10.10.607.2E-6475544IPR009057Homeodomain-like
SMARTSM007172.2478544IPR001005SANT/Myb domain
PROSITE profilePS500907.294544597IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MSVWVGESDV VGKSGKKGKR SQKIEKGGEE EVRDHLDVEE GGIVKSGKKG KRSKKKEMDG  60
VEEETDRMDV VEDGIGNSRK KGKKKEMDGV GEVMDCLDME EDGIENSRKK GRKSKNKEMD  120
GVGEVTDCMD VEEDGIGKSR KKGEKSKEKD GAEEMNDQTN VENDRNLEST VENKKKKNKG  180
NDMVAGGESM TDPQDKEYKV EKRKKKKKTK TFENQDALNK KTETEAKERN NIAGNVEKKK  240
KKRKRTVEEE DDNDKGQTNG CYGEDHVNSL PDDNGMVTIG KVKMMEKKKK RQRKNEEITG  300
KDGLLSKAKD NETTNVSGKD KTESENKDPE NPKSKVKKKV RFSNDLEVFP SNSLVQGKRF  360
TPEEDEKLRA AVKEYIQSHC LGEKGVEMVM NCISHRQVRN CWNEINKALP YRPKAAIYCR  420
AHTLFERGET HEWTEEEKEM LLEQYKKHGN NWKLMAKEFK RHRLQVKDTY RRIKRERNRG  480
HWSQEEYQTL FDNVNIDLRA KLDEEKKSKH GMLRDNICWT AISDKLSTRA DSLCCMKWYN  540
QLTSPMVAQG IWADSDDYRL LDALFNLDAC CIEDVDWDDL MDHRSGDVCR KRWDQMVLHI  600
GLHGVKSFSE QVEVLAKRYR PELTEAREAW DSKPLVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKKKRK
2238244KKKKRKR
3240245KKRKRT
4287292KKKRQR
5334340KVKKKVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219616.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_017219617.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A161ZJB90.0A0A161ZJB9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-108MYB_related family protein