PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024017
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 285aa    MW: 33316.2 Da    PI: 8.0834
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024017genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.97.4e-2530112186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+ qe+ + + +r e++ ++ ++k++k+lWe v+ km+++g++rs++qCk+kw+nl +ryk ++++e ++   +++++p++++l+
  DCAR_024017  30 QWSIQETGDFLMIRAELDPNFMETKRNKALWEVVATKMKDKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG---VKQQFPFYNELQ 112
                  7********************************************************************97...67789****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.10E-252994No hitNo description
PfamPF138372.4E-2030113No hitNo description
PROSITE profilePS500907.053187IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDSGQHQYHH LHHQLQHQQI SDAGGDRFPQ WSIQETGDFL MIRAELDPNF METKRNKALW  60
EVVATKMKDK GYNRSAEQCK CKWKNLVTRY KGCETMEPEG VKQQFPFYNE LQTIFAARMQ  120
RMVWNEAEGG GLGGSKKKAL AQLSSDDEDD NIEESDGDQK GTTAGKKKKR KANRNTPGTS  180
NTGGGNVNNS VDSIKETLQE FLKQQAEMEM RWMNGYEARE EERRIREIEW RQRMEALENE  240
RIMTERSWRE REEQRRVREE GRAEKRDALI TALLNKLRRE DNTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216743.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804501e-68TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A161X3880.0A0A161X388_DAUCS; Uncharacterized protein
STRINGXP_009799172.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-51Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]