PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023730
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 564aa    MW: 61403.5 Da    PI: 5.5365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023730genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09378426355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  DCAR_023730 378 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 426
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.46E-11373430No hitNo description
SuperFamilySSF474597.46E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16376442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6378426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDRGSPDKNK AEERNEDSRK YNAAEVPTDW RLSGANLTNA SMGLIPAENR MGICKADLME  60
SSSCSTASMV DSFCATIWDQ PTTDSQNMGF CDVNVQNITS SSSRFEFRKD NLGPPRTDLE  120
QAIDMGWNPN NPTLKETMLL PTSTRMVPQS LSQFPTDSGF IERAARFSCF SGGNFSNLAN  180
PFTIPESMSP YTRGPAPMQG TQEVLAGSRL NSLSVGQSQI NEMSTAELSK DDIMPIEHGP  240
RRGSPINIER SNSFLRSNDQ AKQALCEPGN ESDEAEFSGG GAQAEPSALG SGGTPAKTHG  300
FKKRKRIGQE SELDQVRGAS VTPEATNDDS DIQRKGDQNP TSTISKPGGK HGKQGSQASD  360
SNKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDFNIEGL LAKDILHSRA GPSSTLGFHP GMSMPYAPMH  480
LPQTGLIPAG LSGMGPSPDE LRRSLTSHLT SMNGGYKEPN PQVPNVWEDE LHNIVQMGLN  540
SNITLDEEDL QGPLQTAHMK AEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219744.10.0PREDICTED: transcription factor bHLH49 isoform X2
TrEMBLA0A164ST190.0A0A164ST19_DAUCS; Uncharacterized protein
STRINGXP_002514566.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-122bHLH family protein