PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023683
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family RAV
Protein Properties Length: 347aa    MW: 39142.2 Da    PI: 9.499
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023683genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1365113155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW A+I++      ++r++lg+f  + eAaka++ a+++++g
  DCAR_023683  65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEHEAAKAYDIAAQRFRG 113
                  89****9888.8*********3.....5**********99*************98 PP
2B3102.81.9e-32182281196
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F++++  +++l++
  DCAR_023683 182 FEKTVTPSDVGKLNRLVIPKQHAEKHfplqNGNTSKGVLLNFEDFGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLNAGDIVSFQRSNGVDKQLYI 279
                  99****************************99999****************************************************87666666776 PP

                  EE CS
           B3  95 kv 96 
                   +
  DCAR_023683 280 DW 281
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-865113IPR001471AP2/ERF domain
CDDcd000181.25E-2665120No hitNo description
SuperFamilySSF541716.28E-1765121IPR016177DNA-binding domain
PROSITE profilePS5103219.98166121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-2066121IPR001471AP2/ERF domain
SMARTSM003806.6E-3066127IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-41172288IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-28180272No hitNo description
SuperFamilySSF1019361.7E-30181282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.085182283IPR003340B3 DNA binding domain
PfamPF023621.3E-29182282IPR003340B3 DNA binding domain
SMARTSM010191.7E-23182285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDGSCLDEST STETLSTTLT ASIFTSSPTL FPKSPESLCR MGSGTSIILD SESGIEAESR  60
KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEHEA AKAYDIAAQR FRGRDAVTNF  120
KLLSQDDDVE IMFLDAHSKA EIVDMLRKHT YIDELEQSKK TNGYKKRMDK NDPSVKSMDR  180
LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL QNGNTSKGVL LNFEDFGGKV WRFRYSYWNS  240
SQSYVLTKGW SRFVKEKGLN AGDIVSFQRS NGVDKQLYID WKPRDGADSG IRVGSDFAPI  300
QPVPMVRLFG VNIFKVPEDG VDGNGKRARE MELFQVPNNN KKHKDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5817928811121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215350.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-140RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A161Y3300.0A0A161Y330_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g03070.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-139RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]