PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 733aa    MW: 82868.9 Da    PI: 5.59
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023511genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06124145426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C ff++ G+C  Gd C+F+H 
  DCAR_023511 124 VPCIFFQQ-GYCLKGDMCPFMHA 145
                  69******.*************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2062958IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183057IPR000571Zinc finger, CCCH-type
PfamPF156631.1E-113184No hitNo description
PROSITE profilePS5010310.856086IPR000571Zinc finger, CCCH-type
SMARTSM003560.226285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192120147IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5120146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6122145IPR000571Zinc finger, CCCH-type
PfamPF146080.19125144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MLDVGHEKLE KNQESQPEIS RTSAEDEALR RNTDCVYFLA SPLTCKKGSE CEYRHSEAAR  60
LNPRDCYYWL NNNCTNPKCA FRHPPLDGLL GTQVAPPVGQ FFPLTQGVPT PSAQALHVPG  120
KQAVPCIFFQ QGYCLKGDMC PFMHAPFSSN DKVAQLAVAT PVTEFQSYKK TFGGLQKSTQ  180
QKNSQNNIGK PVEVPVQVKS VTETQMAPLR NGITANKTLT VYAGLDDELP RYKPANVHSA  240
ATGKSARSNH SQQVDLVENQ SILNSKDADE FSRDHSPGFD VLVDGELGES DYYHDEDQFG  300
GVRGRNERIL NPLNDYEIER TSDYRSMADG DRDMYNDPRG YDSYDHYGRK EHRVSSDRML  360
AGSAHLERRR HLIADSADRT DESDLRHHLL KQKRGDNSRS VVSHSRSREN RFDDRIYRPP  420
QRDHMRARES VISSRLRGRI KIPGRSTSPN NRTGSWSERE SDRGRYRGRM SPERLHGRLK  480
ERMQGRVQED FNNEDRSIRN PSMRLESKNN INESGAPFTG PKRLSELKVG KSESEQHVND  540
RQLLGKRKYP KLDGAPQQGE GDISFEGPKP LSEILKRKRG VTSADYENGS TSRNNNDNYR  600
KEANESVMIP KDTKKPEDVL SSLPVRETSL VERNEEPKHA VADINEAGEK MKSTGDQSSL  660
QSEPEEGLIG DEEMENHDPE AYEQAEGYSD YEQADGEDYN LEEGENLDPG DEYYEEEEDA  720
DDFAKKMGVS YS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218594.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A161WPZ30.0A0A161WPZ3_DAUCS; Uncharacterized protein
STRINGXP_008220996.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633