PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 733aa MW: 82868.9 Da PI: 5.59 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.6e-06 | 124 | 145 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff++ G+C Gd C+F+H DCAR_023511 124 VPCIFFQQ-GYCLKGDMCPFMHA 145 69******.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.206 | 29 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.1E-11 | 31 | 84 | No hit | No description |
PROSITE profile | PS50103 | 10.85 | 60 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.22 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 120 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 122 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.19 | 125 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MLDVGHEKLE KNQESQPEIS RTSAEDEALR RNTDCVYFLA SPLTCKKGSE CEYRHSEAAR 60 LNPRDCYYWL NNNCTNPKCA FRHPPLDGLL GTQVAPPVGQ FFPLTQGVPT PSAQALHVPG 120 KQAVPCIFFQ QGYCLKGDMC PFMHAPFSSN DKVAQLAVAT PVTEFQSYKK TFGGLQKSTQ 180 QKNSQNNIGK PVEVPVQVKS VTETQMAPLR NGITANKTLT VYAGLDDELP RYKPANVHSA 240 ATGKSARSNH SQQVDLVENQ SILNSKDADE FSRDHSPGFD VLVDGELGES DYYHDEDQFG 300 GVRGRNERIL NPLNDYEIER TSDYRSMADG DRDMYNDPRG YDSYDHYGRK EHRVSSDRML 360 AGSAHLERRR HLIADSADRT DESDLRHHLL KQKRGDNSRS VVSHSRSREN RFDDRIYRPP 420 QRDHMRARES VISSRLRGRI KIPGRSTSPN NRTGSWSERE SDRGRYRGRM SPERLHGRLK 480 ERMQGRVQED FNNEDRSIRN PSMRLESKNN INESGAPFTG PKRLSELKVG KSESEQHVND 540 RQLLGKRKYP KLDGAPQQGE GDISFEGPKP LSEILKRKRG VTSADYENGS TSRNNNDNYR 600 KEANESVMIP KDTKKPEDVL SSLPVRETSL VERNEEPKHA VADINEAGEK MKSTGDQSSL 660 QSEPEEGLIG DEEMENHDPE AYEQAEGYSD YEQADGEDYN LEEGENLDPG DEYYEEEEDA 720 DDFAKKMGVS YS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017218594.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A161WPZ3 | 0.0 | A0A161WPZ3_DAUCS; Uncharacterized protein | ||||
STRING | XP_008220996.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023511 |