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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 144aa MW: 16182.7 Da PI: 7.0936 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.6e-07 | 41 | 67 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG k+G C F+H++ DCAR_023169 41 WDEKPCAYYMRTGAYKFGIACIFHHPQ 67 6789*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF50993 | 8.11E-9 | 2 | 41 | No hit | No description |
Pfam | PF02897 | 1.6E-12 | 2 | 43 | IPR023302 | Peptidase S9A, N-terminal domain |
Gene3D | G3DSA:2.130.10.120 | 2.9E-12 | 2 | 42 | IPR023302 | Peptidase S9A, N-terminal domain |
PROSITE profile | PS50103 | 9.779 | 40 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 41 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004252 | Molecular Function | serine-type endopeptidase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0070008 | Molecular Function | serine-type exopeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MQVLLDPNEL SEDGTLALSV YAVSKDAKYL AYALNSSGSD WDEKPCAYYM RTGAYKFGIA 60 CIFHHPQPDP AVSVTGPFHY RSTDSSGYLM EVDFLHGRFP KQHTCMLLIQ EVRRPTCQLF 120 ILPLKGCYLH QNGTLTWIMS LLK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A164UWI7 | 1e-104 | A0A164UWI7_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 3e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023169 |