PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023154

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 282aa MW: 31774.9 Da PI: 5.382

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023154	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	2e-37	23	83	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprC+s ntkfCyynny+l+qPr++CkaCrryWtkGG lrnvPvGgg rk k+ss DCAR_023154 23 HQQALKCPRCESLNTKFCYYNNYNLAQPRFYCKACRRYWTKGGVLRNVPVGGGIRKAKRSS 83 6899*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	14	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	25	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.848	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MQDMRIFNTG IDRRLRTNAA INHQQALKCP RCESLNTKFC YYNNYNLAQP RFYCKACRRY 60 WTKGGVLRNV PVGGGIRKAK RSSKNKKLIS TADQADAEKS AESNSSSERS SLTATTEVVS 120 APSTMSSCPN LFSFATDTNS SQFPVPQVNE PGFNQQNFID PDSAGSMFSD IGQFTEIMAS 180 STTDLGFSIA DTSTFRSGNQ NDDQVQQMQS IRRCELYLEE TTRIESKESD TKMSNDGLTD 240 VEWRVDDQEI YDLTGNVDEA YWSQNQWPDH HSDHSFHFHL P*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017255301.1	0.0	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A161XA60	0.0	A0A161XA60_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	8e-49	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	DCAR_023154