PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022978
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 92aa    MW: 10365.3 Da    PI: 4.3996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022978genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-121259347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+eE + + +a +q+  +   +W  Ia+ +g g+t++q+k+++  +
      DCAR_022978 12 TWTAEENKAFEKALAQFDRDtpeRWQNIAELVGGGKTAEQVKEHYEVL 59
                     6*****************99*************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.677864IPR017884SANT domain
SMARTSM007176.8E-11962IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-141268IPR009057Homeodomain-like
PfamPF002494.4E-101259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-71261IPR009057Homeodomain-like
CDDcd001672.62E-81260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASSSVRDSL STWTAEENKA FEKALAQFDR DTPERWQNIA ELVGGGKTAE QVKEHYEVLL  60
EDLRRIESGH VPIPSYQNTE ISTANEDEEK R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-26479276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214795.17e-62PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1733e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A161YAX21e-60A0A161YAX2_DAUCS; Uncharacterized protein
STRINGMigut.B00229.1.p2e-38(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-30RAD-like 6