PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022912
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 1742aa    MW: 190167 Da    PI: 4.3834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022912genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-0617191740526
                   --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                   +C  f+ tG+Ck+Gd+C+F H+
  DCAR_022912 1719 ICYMFQDTGHCKRGDSCSFRHS 1740
                   6888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.95E-7481534IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.6E-9487535IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.07E-17491533No hitNo description
SMARTSM002498.9E-5491536IPR001965Zinc finger, PHD-type
Gene3DG3DSA:1.10.245.101.2E-26681770IPR003121SWIB/MDM2 domain
SMARTSM001517.6E-5682767IPR019835SWIB domain
SuperFamilySSF475929.16E-21685763IPR003121SWIB/MDM2 domain
PfamPF022015.4E-16689762IPR003121SWIB/MDM2 domain
SMARTSM007191.0E-48822932IPR004343Plus-3 domain
PROSITE profilePS5136026.274822955IPR004343Plus-3 domain
SuperFamilySSF1590421.7E-31823951IPR004343Plus-3 domain
PfamPF031262.5E-22827930IPR004343Plus-3 domain
SuperFamilySSF552777.59E-1811601224IPR003169GYF domain
PROSITE profilePS5082916.70811711225IPR003169GYF domain
CDDcd000722.67E-1611711226No hitNo description
SMARTSM004446.5E-1711721227IPR003169GYF domain
PfamPF022131.3E-1311731217IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.0E-1711731225IPR003169GYF domain
PROSITE profilePS5010313.49717141741IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-517161741IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-417191740IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1742 aa     Download sequence    Send to blast
MEENDDNLSN KSRLIDIDDT VDTLEPKECD VAGEKSSDFE CVGREIEEAE ASIPVTESEN  60
LSENCVELEI DGKFSDGVEV EAGELERKDE LSGEIEVSGV GVDASGIEVR DDKDDEIEGE  120
VLYDTVRGDD KNDELEGEVV AEKKDELQGN YGCQVAKEGE VEGNGVDEGE ILGDNDQVED  180
KDVCEDGFDD KQNVCVQVVA EKKDELEVEG GMNVGEEAGD KVVPESEIKD EAGVELQAGA  240
VCEEVKAEEL KGDCGTEVVG EALCEVGNEA ENKSEIETEM KVSREPVKNV DDMVEEEKVE  300
MGYVSSQSLN EVEERAANIE DNAEHSSGLI GLAEDTVMEE KNLVMESVNK KRDDELDSAP  360
ESDDEEDIME TGREYDEDKF EGEVPQPDGD SQLAEDEEDI METEREFDED KFEGEVPQPD  420
GDSQLAEDEE DERLVGDEEI PAADVEMETE TDAGELVKIS GGKRKRGKNT KAAGKAQPLN  480
MVGLPVEEED VCFVCFDGGD LVLCDRKNCP KAYHASCVNR NEKFFQAKGR WNCGCIKDAV  540
ILCVRGNKGF CEACIKIVMM IEDNAQGSQA QIDFDDKSSW EYLFKDYWID LKESLSISPV  600
EIAKAKNPWK GSALGASKNE SPGEQLDTKD DVGVGTDNAS DNPEASKPKK RKYSKRLKSR  660
ATKQDESTSE AITAGAERKS TPKSTEWASK ELLEFVMHMR DGDRTVLSQF DVQALLLEYI  720
KTNKLRDPRR KSQIICDARL ENIFGKARVG HFEMLKLLES HFLMKEDTQI DDVQGSVVDT  780
ETNHVDADGN IECVIKSGKD RKRKTRKKDG RERQSNLDDY AAIDIHNISL IYLRRKLMED  840
LLEDIETFSD KVVDTFVRIR ISGSNQKQDI YRLVQVKGTT KVDDFYKVGK RTTNLMIEIL  900
NLNKKEVISI DSISNQEFTE DECKRLRQSI KCGFIAPMTV GAIQDKAMEV QVARVNDWLE  960
SEVQRLTHLR DRASDLGKKK QYPLLECVES LQLLRTPEER RRRLEDIPEI HADPKMDPEF  1020
VSEDNDSEID SSKQEIYTRP RGSGFSRRGR EPISPGSGDA KESWTGSRRS SGKGWELNRN  1080
LSDKNLANTV EDAPLSIGVS ADNSWNNGRG SETEKPIILE KPNSVTSSEA FGFNRNSAAR  1140
SDSSSHVQSQ KSPASLLAPV ATAPLNISEI DKIWHYQDPH GKVQGPFSMA QLRKWSNTGY  1200
FPSDLRIWSS SGNKDDSLLL TDALAGKFQK LLPDNGIPNS NNLHNPHLPP LHSLHQGREV  1260
QDAEKLNSDQ NHFTMDSNIN SASRNWAAHS VEIPLLSADG TNSNHNGRNN LVNLPSPTPK  1320
QRSSGEAGRP IGGVSLPGSI EALQSPAAAT PDSTRNLMLA SEKTPSISHP AFGASPNPEQ  1380
GNLLGSTISL PNPQSTVASL HGGQNVSHPF IAPETNANIV QSVTANNPAL GTQNWAGAPT  1440
QSLEANSSIQ ASTQQPVYAQ WSGVQSTPVQ NPSINFPVQG VPQVPNSWRP PMQTNQTNMQ  1500
PNVQWGTGIA DNSASQNLQP DNPNSGWASM QVSPNIGWSG PNPNMNWMAS VQGAQPGNLN  1560
AGWVIPGGSS GVGFQGAVPG NINSGWVPQP GNAVGVVQML GPMNANQGWY SNMAASTQGA  1620
APGNGNAGLA APISNLGSNV QGQMPGNANT GWSAPSGNAN QGWGPLAGNQ GNNRSQHHRI  1680
GDKFSSQKDQ GSQPGRNWNK PSSFGGGGGG PRHGGSRGIC YMFQDTGHCK RGDSCSFRHS  1740
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1649657KRKYSKRLK
2800808RKRKTRKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1501300.0FJ150130.1 Daucus carota subsp. sativus clone BAC C078O02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257744.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1
TrEMBLA0A164V2I80.0A0A164V2I8_DAUCS; Uncharacterized protein
STRINGXP_006487367.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA323623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding