PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022904
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 368aa    MW: 41351.2 Da    PI: 5.8256
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022904genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.2e-083043372154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  DCAR_022904 304 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 337
                  469*****************************87 PP
2ELK29.12.3e-10258279122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  DCAR_022904 258 ELKHELKQGYKEKIVDIREEIL 279
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-1793137IPR005540KNOX1
PfamPF037901.4E-1596136IPR005540KNOX1
SMARTSM012568.6E-27146201IPR005541KNOX2
PfamPF037913.5E-20151200IPR005541KNOX2
PROSITE profilePS512139.969258278IPR005539ELK domain
PfamPF037898.3E-7258279IPR005539ELK domain
SMARTSM011886.1E-4258279IPR005539ELK domain
PROSITE profilePS5007111.726278341IPR001356Homeobox domain
SuperFamilySSF466893.21E-16280344IPR009057Homeodomain-like
SMARTSM003892.4E-11280345IPR001356Homeobox domain
CDDcd000869.24E-12281342No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25285342IPR009057Homeodomain-like
PfamPF059209.8E-18298337IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSFSNQQYSD HNVDGSYVMS PSAPGRSQPP TWLNTAISRN HYRDNANFLN LQTTPNSGDA  60
TQPTWLARPE MNDDVEAIMA PESPDLSGEW QSGKWKAEVL AHPLYEQLLA AHVACLRIAT  120
PVDQLPRINA QLTQSQQVVA KYSALANAAA VDDKDLDQFM THYVLLLCSF KEQLQQHVRV  180
HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDEEDQI DSDANLFDAS MEGGDSMGFG  240
PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ  300
SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSSSTVLK SKRKRSNAGE  360
KSGDRLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A9e-13281345872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334354RKRNWHSNPSSSTVLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258684.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-177KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A161XAU70.0A0A161XAU7_DAUCS; Uncharacterized protein
STRINGGLYMA04G06810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-179KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]