PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022810

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 279aa MW: 30195.7 Da PI: 5.8139

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022810	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.2	2e-09	93	140	4	51
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N++L+k+l+ DCAR_022810 93 KKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRAINQQLAKRLQG 140 355666699***********************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-14	87	158	No hit	No description
SMART	SM00338	8.4E-10	90	157	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	92	139	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-12	92	139	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.52E-7	95	138	No hit	No description
CDD	cd14686	1.24E-12	96	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MVMEAGDLDF TNHELPGGSN LGNVGDLPND CSMDSFLDDF LKDTHACTHA HTCNPPGPDS 60 THTHTCYHVH TKILPASSED VAPSDDTAES ADKKSKKRPL GNREAVRKYR EKKKARAASL 120 EDEVVRLRAI NQQLAKRLQG QAVLEAEVAR LKCLLVDIRG RIEGEIGSFP YQKSAKTGDI 180 YQTPITPNVP SAYVMNPCNL QCDDQVYCLH PGDEGRNAEN AVLNGQGLTG CDFENMQCLG 240 TQNFASNGLP GCELGSSAPP INMSATNKRK GDSFGFPY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254590.1	0.0	PREDICTED: basic leucine zipper 23-like
Refseq	XP_017254591.1	0.0	PREDICTED: basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-108	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A164V5A3	0.0	A0A164V5A3_DAUCS; Uncharacterized protein
STRING	XP_009631591.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	5e-97	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_022810

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]