PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022515
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 417aa    MW: 45640.4 Da    PI: 9.716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022515genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05183205223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C++Cg++F ++  L+ H ++ H
  DCAR_022515 183 TCHKCGEVFGQWKALEAHHMSkH 205
                  8*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.517182210IPR007087Zinc finger, C2H2
PROSITE patternPS000280184205IPR007087Zinc finger, C2H2
SuperFamilySSF563993.02E-20207415No hitNo description
Gene3DG3DSA:3.90.228.102.3E-7208392IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLTVWFNLKR SLHCKEATDV HVPKPKRELS NIFTKKSRRS GCSRSISNLK DVIHGSKLHS  60
ENPVNCSPRS IGSSEFVNPM SHEVILSNSR FELKISGFGG VLEDAGNDGG VGSLRPGTPG  120
PGGHHGMQNF NPSFRNSTAT PPRLSALEGS RRGVLNSRGG HGNSVKARPF VETDTNGLTS  180
SMTCHKCGEV FGQWKALEAH HMSKHAVTEL VEGDSSRKIV EIICRSSWLK TENHCGRIEK  240
VLKVHNMQKM LARFEEYREM VKIQASKLQT KHPRCIADGN ELLRFYGTTV ACSLGINGCT  300
SLCLADKCCV CRIIRNGSSS KREFKGGIGV FTTSTSQRAL ESIEINVNDH TVRKALIVCR  360
VIAGRVHKPL ENIQDIAGQS GFDSLAGKVG LHSNIEELYL LNPRALLPCF VVICKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255452.10.0PREDICTED: uncharacterized protein LOC108225145
TrEMBLA0A161ZTV50.0A0A161ZTV5_DAUCS; Uncharacterized protein
STRINGXP_010267823.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-166C2H2 family protein