PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022405
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 361aa    MW: 40032.2 Da    PI: 7.613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022405genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-06526426
                 ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 +lC+ff+  G C  G++C F+H+
  DCAR_022405  5 VLCKFFSH-GACLKGENCEFSHD 26
                 79**9999.*************5 PP
2zf-CCCH23.87.7e-083454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  C f+++ G C+yG+rC++ H+
  DCAR_022405 34 ACTFYQK-GACSYGSRCRYEHV 54
                 5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.286128IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4628IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0042956IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-53253IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.13139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4143163IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.02E-13197271No hitNo description
Gene3DG3DSA:3.30.40.109.6E-10203266IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.91E-4206266No hitNo description
PfamPF136392.2E-7206265IPR001841Zinc finger, RING-type
SMARTSM001841.7E-6207264IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.312207265IPR001841Zinc finger, RING-type
PROSITE patternPS005180231240IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.85294323IPR000571Zinc finger, CCCH-type
SMARTSM003560.33294322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLSKVLCKFF SHGACLKGEN CEFSHDWKDP ANNACTFYQK GACSYGSRCR YEHVKVSRSQ  60
ACAQSSSAVI LQSSGSFSAA HSSRNAASGV NQVVGVNGDL SASSRSFLAA TDPEMNELSA  120
LPNSLYDSYT QEPGTADPTE LSMCSFAAAG NCPRGEKCPH IHGDLCPTCG KHCLHPYRLE  180
EREDHIRMCE KRQTQIEALK RSQEIECCVC LERVLSKPTP AERKFGLLSE CDHAFCVSCI  240
RNWRSSSPTS GLDVNSALRA CPICRKLSYF VIPSVIWYSS KEEKNEIVDS YKSKLRSIDC  300
RHFDFGDGSC PFGTSCFYKH AYRDGRLEQV DLRHLGAEDG NIVIAKDIRL SDFLHNLRLR  360
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254815.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
RefseqXP_017254816.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
SwissprotE0X9N41e-172C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A161ZU300.0A0A161ZU30_DAUCS; Uncharacterized protein
STRINGcassava4.1_010375m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-150C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]