PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_022400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 691aa MW: 74886 Da PI: 6.3047 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.2e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg DCAR_022400 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 8.1E-19 | 33 | 162 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.8E-18 | 34 | 161 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.55E-16 | 34 | 160 | No hit | No description |
SMART | SM00248 | 1400 | 35 | 65 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 4.2E-12 | 43 | 151 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0017 | 82 | 112 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.724 | 82 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 7.9E-4 | 117 | 149 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.541 | 117 | 152 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 334 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 39 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MCAVLKSTST SSTQSAEESK SDKQNMGLLS VETEDNFSSL LEFAANNDCE AFKALLEENS 60 LAVDEVGLWY VRKKGSKHIV LEHRTPLMVA ATYGSLDVVK FIISQPSVDV NIACGLDKCT 120 ALHCAASGGA VNVVDIVKLL LAVGADPDIK DANGQRAVDV IVAPPKVLYV KASLEELLLS 180 NVLDGLMGDC KLQVSISSQS NSPSLSSSPD NGSPCSPSDI VTSPMPSKFT DVPGGAISEK 240 KEYPIDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCDR RVCFFAHTPD 360 ELRPLYVSTG SAVPSPRSSA SAASVMDMAV AMNLLPGSPS ASLMSPSGFN QPMSPSGNGA 420 HSSLAWPQPN VPTLHLPGSN IQSSRLRSSL SARDVPPEDL HLLEDMDAHQ LLLNDLACLS 480 QSRPSPVSLN RSGRPKTLTP SNLEELFSAE LASSPRYSDQ AASASGFSPS HRSAVFNQFQ 540 QQQNMLSPIN TNVFSPKSAD HPLLQASYGV SSPGRMSPRS VDPISPMGSR HTAFSQREFQ 600 QPQQMRSLSS RDLGSNNVSI VGSPVNSWSK WSSPSGKVDW SVNGDENSWL PRSSSNDLNN 660 NTEEPDISWI QSLVKESPPE MKDKTASFNC * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017259127.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A164VEP3 | 0.0 | A0A164VEP3_DAUCS; Uncharacterized protein | ||||
STRING | XP_009799603.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | DCAR_022400 |
Publications ? help Back to Top | |||
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