PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_022399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76298.8 Da PI: 6.3259 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 281 | 301 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg DCAR_022399 281 PCPDFRK-GACRRGDMCEYAHG 301 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 9.22E-16 | 9 | 135 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.5E-17 | 9 | 136 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.07E-17 | 10 | 132 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1500 | 10 | 40 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 5.9E-13 | 18 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.5E-4 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.618 | 57 | 127 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 2.1E-5 | 58 | 73 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.781 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.5E-4 | 92 | 124 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 2.1E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 276 | 302 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-5 | 281 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 281 | 303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 281 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 309 | 339 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 39 | 311 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MGPLFVDTED NFSSLLEFAA NNDCEAFKAL IKENSLAVDE IGLWYVRKKG SKQIVLEHRT 60 PLMVAATYGS LDVVKFIISQ PAVDVNIACG LDKCTALHCA ASGGAVNAVD IVKLLLAVGA 120 DPNIKDANDQ RAVDVIVVPP KLLDVKASLE ELLLSNVFDG SMGDCKLRVS LSPPSYSPSL 180 SSSPDNGSPY SPSDLVSSPM LSKSTDVPGG AISEKKEYPI DPSLPDIKNS IYSTDEFRMF 240 SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRGDMCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCDRRVCFF AHTPDELRPL YVSTGSAVPS PRSSASAASV 360 MDMAVAMNLL PGSPSASMMS PSGFNQPMSP SGNGAHSSLA WPQPNVPTLH LPGSNMQSSR 420 LRSSLSARDV PPEHLHLLQD MDAHQLLLND LACLSQSRPS PVSLNRSGRP KTLTPSNLED 480 LFSAELASSP RYSDQAASAG GFSPSHRSAV FNQFQQQQNM LSPINTNVFS PKSADHPLLQ 540 ASYGVSSPGR MSPRSVDPIS PMGSRHTAFS QREFQQPQQM RSLSSRDLGS NNVSIVGSPV 600 NSWSKWSSPS GKVDWSVNGD EHSWLPRSSS NDLNNNTEEP DISWVQSLVK ESPLEMKDNL 660 PAPFVSAGPS GEGFKSNSQV ESVDHSVLGA WIEQMQLDQL PV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017259127.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A164VER3 | 0.0 | A0A164VER3_DAUCS; Uncharacterized protein | ||||
STRING | XP_009799603.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | DCAR_022399 |
Publications ? help Back to Top | |||
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