PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022399

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C3H

Protein Properties

Length: 703aa MW: 76298.8 Da PI: 6.3259

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022399	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg DCAR_022399 281 PCPDFRK-GACRRGDMCEYAHG 301 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00204	9.22E-16	9	135	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.5E-17	9	136	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.07E-17	10	132	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1500	10	40	IPR002110	Ankyrin repeat
Pfam	PF12796	5.9E-13	18	126	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4.5E-4	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	15.618	57	127	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	2.1E-5	58	73	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.781	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	2.5E-4	92	124	IPR002110	Ankyrin repeat
PRINTS	PR01415	2.1E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	276	302	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-5	281	301	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	281	303	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	281	303	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-4	309	339	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	39	311	334	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MGPLFVDTED NFSSLLEFAA NNDCEAFKAL IKENSLAVDE IGLWYVRKKG SKQIVLEHRT 60 PLMVAATYGS LDVVKFIISQ PAVDVNIACG LDKCTALHCA ASGGAVNAVD IVKLLLAVGA 120 DPNIKDANDQ RAVDVIVVPP KLLDVKASLE ELLLSNVFDG SMGDCKLRVS LSPPSYSPSL 180 SSSPDNGSPY SPSDLVSSPM LSKSTDVPGG AISEKKEYPI DPSLPDIKNS IYSTDEFRMF 240 SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRGDMCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCDRRVCFF AHTPDELRPL YVSTGSAVPS PRSSASAASV 360 MDMAVAMNLL PGSPSASMMS PSGFNQPMSP SGNGAHSSLA WPQPNVPTLH LPGSNMQSSR 420 LRSSLSARDV PPEHLHLLQD MDAHQLLLND LACLSQSRPS PVSLNRSGRP KTLTPSNLED 480 LFSAELASSP RYSDQAASAG GFSPSHRSAV FNQFQQQQNM LSPINTNVFS PKSADHPLLQ 540 ASYGVSSPGR MSPRSVDPIS PMGSRHTAFS QREFQQPQQM RSLSSRDLGS NNVSIVGSPV 600 NSWSKWSSPS GKVDWSVNGD EHSWLPRSSS NDLNNNTEEP DISWVQSLVK ESPLEMKDNL 660 PAPFVSAGPS GEGFKSNSQV ESVDHSVLGA WIEQMQLDQL PV*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MGPLFVDTED NFSSLLEFAA NNDCEAFKAL IKENSLAVDE IGLWYVRKKG SKQIVLEHRT  60
PLMVAATYGS LDVVKFIISQ PAVDVNIACG LDKCTALHCA ASGGAVNAVD IVKLLLAVGA  120
DPNIKDANDQ RAVDVIVVPP KLLDVKASLE ELLLSNVFDG SMGDCKLRVS LSPPSYSPSL  180
SSSPDNGSPY SPSDLVSSPM LSKSTDVPGG AISEKKEYPI DPSLPDIKNS IYSTDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCDRRVCFF AHTPDELRPL YVSTGSAVPS PRSSASAASV  360
MDMAVAMNLL PGSPSASMMS PSGFNQPMSP SGNGAHSSLA WPQPNVPTLH LPGSNMQSSR  420
LRSSLSARDV PPEHLHLLQD MDAHQLLLND LACLSQSRPS PVSLNRSGRP KTLTPSNLED  480
LFSAELASSP RYSDQAASAG GFSPSHRSAV FNQFQQQQNM LSPINTNVFS PKSADHPLLQ  540
ASYGVSSPGR MSPRSVDPIS PMGSRHTAFS QREFQQPQQM RSLSSRDLGS NNVSIVGSPV  600
NSWSKWSSPS GKVDWSVNGD EHSWLPRSSS NDLNNNTEEP DISWVQSLVK ESPLEMKDNL  660
PAPFVSAGPS GEGFKSNSQV ESVDHSVLGA WIEQMQLDQL PV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017259127.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A164VER3	0.0	A0A164VER3_DAUCS; Uncharacterized protein
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	DCAR_022399

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]