 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
DCAR_022323 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
NAC |
| Protein Properties |
Length: 352aa MW: 40356.1 Da PI: 6.8786 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_022323 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 157.5 | 5.5e-49 | 23 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
+pGfrFhPt+eelv +yL++ vegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rdkky++g+r+nr+t+sgyWkatg d+ + +++ +
DCAR_022323 23 MPGFRFHPTEEELVEFYLRRMVEGKRFNV-ELITFLDLYRYDPWELPAFAAIGEKEWFFYVPRDKKYRNGDRPNRVTTSGYWKATGADRMIRTENLRS 119
79***************************.89***************8777899******************************************** PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
+glkktLvfy+g+apkg +t+W+m+eyrl
DCAR_022323 120 IGLKKTLVFYTGKAPKGIRTSWIMNEYRL 148
***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MSQNHHLDHK DDDEDEHEHD MVMPGFRFHP TEEELVEFYL RRMVEGKRFN VELITFLDLY 60
RYDPWELPAF AAIGEKEWFF YVPRDKKYRN GDRPNRVTTS GYWKATGADR MIRTENLRSI 120
GLKKTLVFYT GKAPKGIRTS WIMNEYRLPH HETERLQKAE ISLCRVYKRP GVEDHPSLPR 180
ILPTRASSSR TNPSTKRHDR DPPAQHHAME KLQVFGDQTV QQTSQKLSDT ISADSTTEDI 240
GTTSLCLSSQ NPSSSLLINS PNTIHDFHTL ISYHQASVNQ PHQFFPDTLQ LSANNVLQPA 300
QQLQSLTLAV FPAESAQSAY SDRVMWDWNS IPEATASRDH GAFLGRFSGS I*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-54 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-54 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
