PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021958
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 267aa    MW: 28481.7 Da    PI: 8.9633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021958genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017104126123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k Fs+   L  H  +H
  DCAR_021958 104 YKCGVCNKAFSSYQALGGHKASH 126
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-6103126No hitNo description
PfamPF139125.0E-12103128IPR007087Zinc finger, C2H2
SMARTSM003550.031104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034104126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-4104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-6156183No hitNo description
PfamPF139121.8E-8160185IPR007087Zinc finger, C2H2
SMARTSM003553.6161183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MALEAMNSPK IPTPPPLNNY KPLNNNTNSA STSTTTTLLH NSEPWMKKKR SKRPRSETPP  60
PSEEEYLALC LIMLARGGAA ASPTPIHRQE PREVLSDNHD ANTYKCGVCN KAFSSYQALG  120
GHKASHRKTL ATAAEDKNNN SANSNGTLTT NLGLNPSGRA HVCAICHRSS PTGQALGGHK  180
RRHYEGNINA TAASGSAATV VSSSSVPAGS TQNRGFDFDL NLPASPEEDS PLEVIVDFSR  240
GSQLSGEQEV ESPLPVKKPR FLIPNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552MKKKRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257031.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A164VQ150.0A0A164VQ15_DAUCS; Uncharacterized protein
STRINGXP_009625229.11e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-36salt tolerance zinc finger