PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_021729

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 1057aa MW: 119535 Da PI: 5.3071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021729	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.2	1.2e-30	55	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 lp+G++F+P+d +++ e+L++k+ + + ++e+i+++d i++++P++Lp +k++ +++yfF+k++++yatg+rk+r+ ++ + DCAR_021729 55 LPAGVKFDPSDVQIL-EHLAAKCGVGEsdphMFIDEFIPTLDmengICYTHPENLP-GAKEDGTSVYFFHKTANAYATGQRKRRKiqnedssgKEHVR 150 799********99.9999998777756663344456666555569*****.56678899***************85666666655889 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+k+vl+ +g+++g kk++v+y + +k+ek++Wvmh+y+l DCAR_021729 151 WHKTGKTKPVLE-NGTQKGSKKIMVLYrsAVNGSKPEKSNWVMHQYHL 197 ********.999*******4423677777*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-34	42	216	IPR003441	NAC domain
PROSITE profile	PS51005	30.039	55	216	IPR003441	NAC domain
Pfam	PF02365	2.7E-12	56	197	IPR003441	NAC domain
PROSITE profile	PS51295	18.564	579	676	IPR001890	RNA-binding, CRM domain
SuperFamily	SSF75471	2.88E-20	580	674	IPR001890	RNA-binding, CRM domain
SMART	SM01103	2.7E-18	581	665	IPR001890	RNA-binding, CRM domain
Pfam	PF01985	1.0E-17	581	665	IPR001890	RNA-binding, CRM domain
Gene3D	G3DSA:3.30.110.60	1.2E-15	581	674	IPR001890	RNA-binding, CRM domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003723	Molecular Function	RNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
MARSWLVDGR AIARKVKHAT LPFADQIKDC GVKRECPNCF YCIDNSDVSH AWPGLPAGVK 60 FDPSDVQILE HLAAKCGVGE SDPHMFIDEF IPTLDMENGI CYTHPENLPG AKEDGTSVYF 120 FHKTANAYAT GQRKRRKIQN EDSSGKEHVR WHKTGKTKPV LENGTQKGSK KIMVLYRSAV 180 NGSKPEKSNW VMHQYHLGTE EDEKDGDYVV SRIFYQHQKQ GEKIDGPVAI TESNKVMLHT 240 SPKTPKTNTP NPPRPGNSGY LDDIMDEFQL RSSTYEAEYI TEMNKPSSDV HLKDGIDDSY 300 LAGESQAVVD QGAEFVTQMN EPFSDVHLKD DIDYSDLVGK SQAIVDQGAA FITEMNQPSD 360 VFFRDNIDYP YLAGESQDVH LDGIEDSLLC DEIFESSALY NNNNNSGLCY NSSSVLPCEV 420 TDASGAANNE SCGIPDLDDI DLDTPPDFQL SKLNMCPLIN CRNVIIHNDL SPKTILNNAI 480 GTDVSVSSHY LLNCFDGCRA MATSRGKSMR SKVETRMRKE SGKTLREIRR SKKLRKKMMT 540 DEERLIYNLR RAKKKVALLL QKLKKYELPE LPPPRHDPEL LTPEQLQAYR KIGFRNKNYV 600 PVGVRGVFGG VVQNMHLHWK FHETVQVCCD NFPKEKIKEM ATMLARLSGG IVINVHNVKT 660 IIMFRGRNYR QPKNLIPINT LTKRKALFKA RFEQALDSQK LNMKKLEQQL RRMGVNPDDP 720 VAMASIQRVA STFFNAIDKK EGSPYVFRGD KLRAAETTSK IKQAEPEDDS DQEELDKFIA 780 EIEDAADREW EAEEAAEQEE ASKLRYWNKG DLDGRSYRSE LVKGGYDDDE SKHGARSWKD 840 KNTNRQRINH SEDDEDDDSD DGDDEEWNAS YARAINKRES DADDNHKFRE KFTSPKVDSW 900 KAAKSGKHNN VDGFKMEVED KFRGKLAENV SESDEMLTDL DDAMWESDDN RETVESAKSR 960 TASYKDMSSS EEENSGYTND AKNKVNGMKN QQNVHGQKRS EDLISDSEIL MWESDNEEEP 1020 GCTMPGKLTH GDRNKNSGAG SKMKTPKEAD ETWDSD*

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

MARSWLVDGR AIARKVKHAT LPFADQIKDC GVKRECPNCF YCIDNSDVSH AWPGLPAGVK  60
FDPSDVQILE HLAAKCGVGE SDPHMFIDEF IPTLDMENGI CYTHPENLPG AKEDGTSVYF  120
FHKTANAYAT GQRKRRKIQN EDSSGKEHVR WHKTGKTKPV LENGTQKGSK KIMVLYRSAV  180
NGSKPEKSNW VMHQYHLGTE EDEKDGDYVV SRIFYQHQKQ GEKIDGPVAI TESNKVMLHT  240
SPKTPKTNTP NPPRPGNSGY LDDIMDEFQL RSSTYEAEYI TEMNKPSSDV HLKDGIDDSY  300
LAGESQAVVD QGAEFVTQMN EPFSDVHLKD DIDYSDLVGK SQAIVDQGAA FITEMNQPSD  360
VFFRDNIDYP YLAGESQDVH LDGIEDSLLC DEIFESSALY NNNNNSGLCY NSSSVLPCEV  420
TDASGAANNE SCGIPDLDDI DLDTPPDFQL SKLNMCPLIN CRNVIIHNDL SPKTILNNAI  480
GTDVSVSSHY LLNCFDGCRA MATSRGKSMR SKVETRMRKE SGKTLREIRR SKKLRKKMMT  540
DEERLIYNLR RAKKKVALLL QKLKKYELPE LPPPRHDPEL LTPEQLQAYR KIGFRNKNYV  600
PVGVRGVFGG VVQNMHLHWK FHETVQVCCD NFPKEKIKEM ATMLARLSGG IVINVHNVKT  660
IIMFRGRNYR QPKNLIPINT LTKRKALFKA RFEQALDSQK LNMKKLEQQL RRMGVNPDDP  720
VAMASIQRVA STFFNAIDKK EGSPYVFRGD KLRAAETTSK IKQAEPEDDS DQEELDKFIA  780
EIEDAADREW EAEEAAEQEE ASKLRYWNKG DLDGRSYRSE LVKGGYDDDE SKHGARSWKD  840
KNTNRQRINH SEDDEDDDSD DGDDEEWNAS YARAINKRES DADDNHKFRE KFTSPKVDSW  900
KAAKSGKHNN VDGFKMEVED KFRGKLAENV SESDEMLTDL DDAMWESDDN RETVESAKSR  960
TASYKDMSSS EEENSGYTND AKNKVNGMKN QQNVHGQKRS EDLISDSEIL MWESDNEEEP  1020
GCTMPGKLTH GDRNKNSGAG SKMKTPKEAD ETWDSD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017258745.1	0.0	PREDICTED: uncharacterized protein LOC108227881
TrEMBL	A0A164VV74	0.0	A0A164VV74_DAUCS; Uncharacterized protein
STRING	XP_010108843.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8122	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	3e-94	NAC domain containing protein 44

Link Out ? help Back to Top
Phytozome	DCAR_021729