PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 437aa MW: 50011.2 Da PI: 8.8673 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 189 | 235 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd llvd vk++G + W+ Ia+++ gR +kqc++rw+++l DCAR_021570 189 KGQWTAEEDRLLVDMVKKYGVRKWSHIASMLK-GRIGKQCRERWHNHL 235 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 243 | 283 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++Ed +l++a+ + G++ W+ Ia++++ gRt++++k++w+ DCAR_021570 243 LWSEDEDRILIQAHSKVGNK-WAEIAKRLP-GRTENSIKNHWN 283 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.873 | 182 | 239 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-18 | 188 | 237 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.1E-31 | 188 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-27 | 190 | 242 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.60E-16 | 192 | 235 | No hit | No description |
Pfam | PF13921 | 4.2E-17 | 192 | 249 | No hit | No description |
SMART | SM00717 | 3.8E-17 | 240 | 288 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.574 | 240 | 290 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 243 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-13 | 244 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MELDTHHKED HHVYQSILLP GNYIKPEIDN DFSVNIGSSK GFYQDNYQTL DQFSFTGSSS 60 SYNHPNKISS PNVFSDPYDP FIYPSGKSYD IFDQFKPFEE NGGSSFVQNS SDLQVGGFVN 120 NPTAGKVDCN ASDQRRRLGK MSVMVPDEGS CVTADHKNIP GKYFGKRSDA FTSSSTKPSK 180 NTKKLKSSKG QWTAEEDRLL VDMVKKYGVR KWSHIASMLK GRIGKQCRER WHNHLRPDIK 240 KDLWSEDEDR ILIQAHSKVG NKWAEIAKRL PGRTENSIKN HWNATKRRQY SRRKCRTKWP 300 RPSSLLQHYI KSLHLDNTKP TNYRRKSSSI NKTPAEVIPK LNIPTTKPPN WSEKAEFCPN 360 FDDDLKELAE LNFMENPFEG VSIDDLLEDL PPIKTPPVED SGIDMNLDSN DQRPTLMQCQ 420 VKKDLDLMEM ISQINM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-44 | 189 | 289 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-44 | 189 | 289 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-44 | 189 | 289 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256574.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 1e-76 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A164VZ44 | 0.0 | A0A164VZ44_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-74 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021570 |
Publications ? help Back to Top | |||
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