PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021549

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 295aa MW: 32533.4 Da PI: 5.8681

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021549	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	136	183	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq DCAR_021549 136 SHSLAERARREKISERMKILQDIVPGC----NKVIGKALVLDEIINYIQSLQ 183 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.65E-9	130	187	No hit	No description
SuperFamily	SSF47459	9.55E-16	130	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-16	132	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	132	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-8	136	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-10	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDPPIINETC FSAANPSSYS LAEIWPFPIN VNEAGTTVPG GLGLRISGFG DSTNHDLEES 60 TVTDQSATRA QTNNNQTDDN YENVSNGKRL KVLGSIEEQG GSKAEVEASS GSGNKSTEQV 120 KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDIVP GCNKVIGKAL VLDEIINYIQ 180 SLQRQVEVIA DSVNLRFYFL SMKLEAVTSR NEPTMEGISS RNLSANILST YITSVGFSLS 240 FILLFLNCKS ISRHGFWLTK LKLNRLGENT SIDVIAIHHS IMDDETYQLT PHEH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017255583.1	1e-151	PREDICTED: transcription factor bHLH79-like
Swissprot	Q9LV17	1e-59	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A164VZR5	0.0	A0A164VZR5_DAUCS; Uncharacterized protein
STRING	XP_010272168.1	1e-84	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	6e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_021549

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]