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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 28385 Da PI: 4.9314 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.6e-39 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCa C+++rrkC+++Cvlap fpa+qp f+n+hklFG+ n+lk+lk+l+e+++++am+s++yeA++r + Pv+G++gv++++q q++q+++el+ + DCAR_021542 9 ACARCRYQRRKCTSECVLAPFFPADQPTIFQNAHKLFGVGNILKILKDLDETQKTEAMKSIIYEANIREKFPVHGCLGVVMQYQYQIQQMQEELQIVL 106 7*********************************************************************************************9876 PP DUF260 99 ee 100 ++ DCAR_021542 107 SQ 108 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.991 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-37 | 9 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSKSGTNQAC ARCRYQRRKC TSECVLAPFF PADQPTIFQN AHKLFGVGNI LKILKDLDET 60 QKTEAMKSII YEANIREKFP VHGCLGVVMQ YQYQIQQMQE ELQIVLSQLA FWKQRLPRDD 120 PSQVLSGLSV TPVPQNAVDF YETQCINHVT LPIASDPLFF GSGNVSHDHV HGAGPYNGSY 180 NVVDSLRIQT DDNQMVQNQL QALNVQQDVV DEDYEFIDAI DDRQSLVDSK ETGQLSLDSR 240 VKDSRSLLGT LV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-27 | 2 | 109 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-27 | 2 | 109 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257559.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A161XED5 | 0.0 | A0A161XED5_DAUCS; Uncharacterized protein | ||||
STRING | XP_006439670.1 | 2e-62 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 5e-38 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021542 |