PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021402
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 341aa    MW: 38315.6 Da    PI: 6.0413
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021402genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.93.8e-2541134186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWt+qe+l Lie+++  e+r r+g+         + +p+W++vs++++++g++r+p+qC+++w+nl +++kkik++e+k ++ +s  + + ++l+
  DCAR_021402  41 RWTRQETLILIEGKKAAENRDRKGRrsssvfgsdQLEPKWDSVSSYCKQHGVNRGPVQCRKRWSNLVGDFKKIKAWESKSQELDS-YWMMRNDLR 134
                  8**************999999987555677777799*******************************************988887.999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22434107IPR017877Myb-like domain
PfamPF138372.4E-1240126No hitNo description
Gene3DG3DSA:1.10.10.603.1E-641106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALVPVDTKP NVETPVAKVV EGPQTKVDGG DDKNKTARHP RWTRQETLIL IEGKKAAENR  60
DRKGRRSSSV FGSDQLEPKW DSVSSYCKQH GVNRGPVQCR KRWSNLVGDF KKIKAWESKS  120
QELDSYWMMR NDLRKDRKLP GYFDNEVYDV LDGKAYTAAA YQLALVTITA EAKNDEAEAV  180
VAEEAEEVEE DAEPVFDSAR HATAEDGLFS DSEELGQMET DGNHGKERIS ADDPAKKIPS  240
PKPISGTSKE QQAGSCYWKE FQSQEGCKRR RMSRVESRDG NLEDRLVKVL ERNASSFNAH  300
LEAQNMNHKL DRDQQRYQNE NLVAALDKIA GALTKIADKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256610.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A161XEP30.0A0A161XEP3_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g00270.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-80Trihelix family protein